Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30721
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39810.1 68418.m04822 MADS-box family protein contains simila...    31   0.58 
At5g39750.1 68418.m04815 MADS-box family protein contains Pfam p...    30   1.8  
At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containi...    30   1.8  
At5g37415.1 68418.m04501 MADS-box family protein contains Pfam p...    29   2.3  
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina...    28   5.4  

>At5g39810.1 68418.m04822 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]
          Length = 329

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 336 NSCFVRSILMENSFEYDTTTSPSIININY----YIVCKYDSNEFTINLTNVNILKDS 494
           N+ F  S +  N+ ++        +N NY    ++ C YD N FT ++TN N+L D+
Sbjct: 270 NNNFQHSFV-SNTQDHSAPAVQESVNNNYGLMPHVPCGYDQNLFTSDITNNNLLIDN 325


>At5g39750.1 68418.m04815 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL81
          Length = 355

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 336 NSCFVRSILMENSFEYDTTTSPSIININY----YIVCKYDSNEFTINLTNVNIL 485
           N+ F  S +  N+ ++        +N NY    ++ C YD N FT ++TN N+L
Sbjct: 296 NNNFQHSFV-SNTQDHSAPVVQESVNNNYGLMPHVPCGYDQNLFTSDITNNNLL 348


>At1g02060.1 68414.m00126 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 181 HSLVIKMYKTVTELGIMMFIKLEILYYNGLRSAGRWNRQGFL 56
           HS    +Y  + ELG    +   ++  N L +AG+W    F+
Sbjct: 652 HSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFV 693


>At5g37415.1 68418.m04501 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL105
          Length = 242

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 426 IVCKYDSNEFTINLTNVNILKDS 494
           ++C YD N FT ++TN N+L D+
Sbjct: 216 VLCGYDQNLFTSDITNNNLLIDN 238


>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 769

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 106 YYNGLRSAGRWNRQGFLWRGHVAWRRGERY 17
           +YNG R  G W +     RG ++W  G+ +
Sbjct: 125 WYNGNRFIGNWKKGKMSGRGVMSWANGDLF 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,494
Number of Sequences: 28952
Number of extensions: 270093
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)