Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30715
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    33   0.23 
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    30   1.6  
At1g31830.2 68414.m03909 amino acid permease family protein weak...    28   6.6  
At1g31830.1 68414.m03910 amino acid permease family protein weak...    28   6.6  

>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 648 GTCP--TNLLYGTSLQECHYIAPNDRDVIINRDRGNLGGRGTP*QSAVSV 505
           GTCP  TN  +  +++E     PN ++++   +    GG GTP  S V +
Sbjct: 103 GTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEI 152


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 539 VGGRRDNQPSPSEHLHSSHTPDPLDIFNKKENTRR 435
           VG R   +P PS+H H SH P    I  ++E   R
Sbjct: 105 VGRRERAKPDPSKHHHRSHLPHSKKIETEEERRLR 139


>At1g31830.2 68414.m03909 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 479

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 663 VEQPIGTCPTNLLYGTSLQECHYIAP 586
           VE P  T P  L YG  L  C YI P
Sbjct: 236 VENPNHTLPKALFYGVILVACSYIFP 261


>At1g31830.1 68414.m03910 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 495

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 663 VEQPIGTCPTNLLYGTSLQECHYIAP 586
           VE P  T P  L YG  L  C YI P
Sbjct: 252 VENPNHTLPKALFYGVILVACSYIFP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,262
Number of Sequences: 28952
Number of extensions: 299168
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)