Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30710
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0V168 Cluster: Glycosyl hydrolase-like; n=3; Clostridi...    33   9.2  

>UniRef50_A0V168 Cluster: Glycosyl hydrolase-like; n=3;
           Clostridia|Rep: Glycosyl hydrolase-like - Clostridium
           cellulolyticum H10
          Length = 812

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 475 GDFRQCAVKTSDAISRLFPDDELIDNRKIDN*IVVVFNENSNSLTFLINFFTRHNFC 645
           G +     KT DA  R  P+  LI+ RK  N  V V++ NSN+L F  N  +   +C
Sbjct: 594 GSYAASYSKTPDADIRTNPNMYLIEMRKRGN-RVRVYSGNSNTLRFTANISSTGGYC 649


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,500,313
Number of Sequences: 1657284
Number of extensions: 12887330
Number of successful extensions: 27227
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 26515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27221
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)