Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30710
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At1g53390.1 68414.m06052 ABC transporter family protein similar ...    29   4.0  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    28   7.0  
At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9...    27   9.3  

>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1077

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 114 DVLMFRCKMQNSFVIKKVL*DLVSKNPGLGKGLF 215
           DV+   C+M+N    K +L D++SK P  G  +F
Sbjct: 878 DVIHSLCRMRNVKDAKALLLDMISKGPAPGNAVF 911


>At1g53390.1 68414.m06052 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
           sapiens]
          Length = 1092

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = -1

Query: 362 FDSIMIVYHCGSTQWLREVDGDH*PDGKKTSAGPTWIDVTQDIDAWASLEESFTQSG-VL 186
           F  + +       Q LR V G   P       GP+    T  + A A        SG +L
Sbjct: 492 FKDLTLTLKSNGKQVLRCVTGSMKPGRITAVMGPSGAGKTSLLSALAGKAVGCKLSGLIL 551

Query: 185 AN*ILQHLFNYKTILHFAPKH*YIYTNIIKRKDLF 81
            N   + + +YK I+ F P+   ++ N+   ++L+
Sbjct: 552 INGKQESIHSYKKIIGFVPQDDVVHGNLTVEENLW 586


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 372 DRIIRFNNDCLSLWIDPMAKRSRWRS---LTRWEEDLSWPNLDRRNTGYRRLGIF 217
           D++   NND + LWI   A++ +W S   L R+  +    N   + TG    G F
Sbjct: 273 DKLYTLNNDGIRLWILEDAEKHKWSSKQFLARYVHNDLRTNTISKLTGVTHAGEF 327


>At3g53760.1 68416.m05939 tubulin family protein similar to
           SP|Q9SC88 Gamma-tubulin complex component 4 homolog
           {Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
           Gamma-tubulin complex component 4 {Homo sapiens};
           contains Pfam profile PF04130: Spc97 / Spc98 family
          Length = 745

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 424 DVKGYRLHMQYIYLL*QGDFRQCAVKTSDAISRLFP 531
           D+ G+   ++  +LL +GDF QC ++ S  + RL P
Sbjct: 400 DLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPP 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,440
Number of Sequences: 28952
Number of extensions: 285427
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)