Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30707
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E822 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE...    33   5.6  
UniRef50_Q8U3A4 Cluster: Putative uncharacterized protein PF0566...    32   9.7  

>UniRef50_A2E822 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 176

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +2

Query: 329 ILTLFRF-YLLLPFHISLINVI--KY*YALTQLLENSYTSSANASLDF-MNIASFISSKV 496
           ILT  ++ Y  +  +I ++N I  KY ++   LL++ Y S  +  L   ++I S ISS+V
Sbjct: 54  ILTAIQYNYGSVALYIKILNQILAKYAFSYKNLLQDRYISGISQRLRLNISINSDISSQV 113

Query: 497 KFNRG 511
            FNRG
Sbjct: 114 DFNRG 118


>UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE
           MCM FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA
           REPLICATION LICENSING FACTOR OF THE MCM FAMILY -
           Encephalitozoon cuniculi
          Length = 708

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -3

Query: 185 RKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVFFS 54
           RK L S+R  GD + IL+ G  G+ KS LLSF ++  E+G++ S
Sbjct: 348 RKELGSSRLRGDIN-ILLAGDPGISKSQLLSFIHRTSERGMYTS 390


>UniRef50_Q8U3A4 Cluster: Putative uncharacterized protein PF0566;
           n=2; Pyrococcus|Rep: Putative uncharacterized protein
           PF0566 - Pyrococcus furiosus
          Length = 1105

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 248 MYLPTFIYFP-TFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKS-TLLSFHYQEK 75
           +YL +  +F  T+F   +  I  KV+++ R    ++ ILIY + G  KS TLLS ++  +
Sbjct: 36  IYLDSVEFFKRTYFTSSIVDILEKVIKTLRGEERNNVILIYSLFGGGKSHTLLSVYHALR 95

Query: 74  EQG 66
             G
Sbjct: 96  NPG 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,483,828
Number of Sequences: 1657284
Number of extensions: 8560365
Number of successful extensions: 15855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15849
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)