Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30707
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   3.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   8.9  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   8.9  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 335 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIASFIS 487
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A  +S
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLS 309


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 230 IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVF 60
           IY    F+PQ   + R        P  +  +L+  I+G+ K  + S    EK  GVF
Sbjct: 460 IYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVF 516


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -1

Query: 283 ELFKFEFTEIRLCIYLPSFIFQPFFCPRFLRYRERFYA 170
           ELF     E  L   LPS  FQP F    L  +E  YA
Sbjct: 380 ELFSQITREASLLYCLPSTDFQPLFVSEKLSIQEVTYA 417


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 261 QKYDYVFTYLHLFSNLFSAPGFYD 190
           Q YDY +T  + F+    A GFYD
Sbjct: 11  QYYDYSYTADNSFNTQSRAAGFYD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,623
Number of Sequences: 5004
Number of extensions: 40628
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)