Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30706
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)                     27   8.3  
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)               27   8.3  
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)                    27   8.3  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)                         27   8.3  

>SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)
          Length = 1041

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 284 LSAARAPPHCRSASALWATAAREQHPASC 198
           LS    PP C   S + + A R + PASC
Sbjct: 190 LSRCLEPPECHIFSGVGSFARRRRRPASC 218


>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
          Length = 284

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 ASNDTRNHVSPSSCVASNPLRCSTCG 365
           AS+D+R H   +    S P +C  CG
Sbjct: 130 ASDDSRAHTGKNRTYPSKPCKCKECG 155


>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
          Length = 881

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 251 SASALWATAAREQHPASCRRPASNK-TSCGLMPFHVTLYGSPPLGGF 114
           +   L+A A      AS R  A  K T   L+   V + G PPLGGF
Sbjct: 361 AGDGLYAGAVNIMLLASVREEAYPKATGASLVIMSVGVAGGPPLGGF 407


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 361 QVLHRSGFEATQELGDTWLRVSLEAG 284
           +V+HR+G + T   GD W++V+   G
Sbjct: 220 KVVHRTGIKDTNPEGDKWIQVASPPG 245


>SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)
          Length = 307

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 565 LYESPLPSRR---HGLRWRGNIAWMRV 494
           L + PLP+     HGL+ RG + W+R+
Sbjct: 68  LLDKPLPAHAGVLHGLKLRGKLGWLRM 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,057
Number of Sequences: 59808
Number of extensions: 284611
Number of successful extensions: 1358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)