Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30705
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16370.1 68418.m01913 AMP-binding protein, putative similar t... 32 0.35
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t... 32 0.35
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 31 1.1
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 2.4
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t... 29 2.4
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 29 3.2
At4g18610.1 68417.m02756 expressed protein contains Pfam profile... 29 4.3
At5g61360.1 68418.m07699 expressed protein 28 5.6
At3g27325.1 68416.m03415 expressed protein 28 7.4
>At5g16370.1 68418.m01913 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA adenosine monophosphate binding protein 5 AMPBP5
(AMPBP5) GI:20799718
Length = 552
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 YFERKSVILG---LRVFGGTTLYTWAETYLCCISFATTL 412
+ ER + + G V+G T+YTW ET L C+ A++L
Sbjct: 19 FLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSL 57
>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
adenosine monophosphate binding protein 6 AMPBP6
(AMPBP6) GI:20799720
Length = 550
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 YFERKSVILG---LRVFGGTTLYTWAETYLCCISFATTL 412
+ ER + + G V+G T+YTW ET L C+ A++L
Sbjct: 19 FLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSL 57
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to
LBA isoform gamma (GI:10257405) [Mus musculus]; similar
to beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 219 SLLSAVISALTPLSLS-LISSFTHSIHVFFGRPLPPLPCTTISIH 88
SL A TP S S ++ + + + +FGRP+ LP T S+H
Sbjct: 289 SLSGAAGDEKTPYSFSAVVFALCYLVFPYFGRPMSLLPLTVSSVH 333
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 296 VRSYFERKSVILG--LRVFGGTTLYTWAETYLCCISFATTL 412
V + ER + + G + TT++TW+ET+ C+ A+TL
Sbjct: 16 VLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTL 56
>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam profile: PF00501 AMP-binding enzyme;
identical to cDNA adenosine monophosphate binding
protein 8 AMPBP8 (AMPBP8) GI:20799724
Length = 544
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 YFERKSVILG---LRVFGGTTLYTWAETYLCCISFATTL 412
+ ER + + G V+G +T+YTW ET C+ A+ L
Sbjct: 19 FLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASAL 57
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 401 QKRYNRGKSLPKCIVWFPQKPSALKSRISAQNRNGQVQ 288
Q+R R K P ++W P++ + +S+ NG+V+
Sbjct: 372 QERRTRNKDRPDRVMWAPRRDGSEDQPLSSAGNNGEVK 409
>At4g18610.1 68417.m02756 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 191
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 153 HSIHVFFGRPLPPLPCT 103
H VFFG+P PP PCT
Sbjct: 87 HQACVFFGQPDPPGPCT 103
>At5g61360.1 68418.m07699 expressed protein
Length = 210
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 443 IRCFYVFMVVKVWWQKRYNRGKSLPK 366
+R FY MV+ +WW KR + L K
Sbjct: 145 LRSFYSVMVIFLWWWKRNRTRRRLEK 170
>At3g27325.1 68416.m03415 expressed protein
Length = 1048
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 177 LSLISSFTHSIHVFFGRPLPPLPCTTISIHLL 82
L LISS +S G+P+PPL T++I +L
Sbjct: 797 LPLISSLFYSF--LMGQPIPPLTSFTVAIRIL 826
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,249
Number of Sequences: 28952
Number of extensions: 278674
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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