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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30700
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)               33   0.17 
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)                   29   3.6  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              28   8.2  
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            28   8.2  
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)               28   8.2  

>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
          Length = 815

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 443 KQLAVLARFAGHLKLTLLFIVIIITESNTHININLSMKYMY 565
           K+LA  A  A        ++V++I +SNTHI  N+S+K +Y
Sbjct: 111 KRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLKDLY 151


>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 443 KQLAVLARFAGHLKLTLLFIVIIITESNTHININLSMKYMY 565
           K+LA  A  A        ++V++I +SNTHI  N+S+K +Y
Sbjct: 865 KRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLKDLY 905


>SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16)
          Length = 997

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -3

Query: 369 VTTQFVDISLR-KFTNQQALWHIYYCSYTR*CDKTRTKIYVRFFFIVYKT*SYTARCGK- 196
           ++T F+D  ++   + Q+AL  +    Y R     R  I  RF  + Y     TARCGK 
Sbjct: 77  ISTVFLDYQVKVDISTQKALVELLKRRYKRQPRLNRDAI-TRFLALSYTVTPRTARCGKA 135

Query: 195 RRDT 184
           +RDT
Sbjct: 136 KRDT 139


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 351 DISLRKFTNQQALWHIYYCSYTR*CDKTRTKIYVRFFFIVYKT*SYTARCGKR 193
           D+   +  N    W +Y   Y + C   RTK+ +  FF++    +Y   CG R
Sbjct: 359 DVKAEQPLNAAPSWSVY-SEYLKACGGVRTKVGI-LFFLLGSQPNYAEICGLR 409


>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 485 LTLLFIVIIITESNTHININL 547
           +T+LFIVIII   + +ININ+
Sbjct: 405 ITILFIVIIIIIKDNNININI 425


>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
          Length = 166

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 485 LTLLFIVIIITESNTHININL 547
           +T+LFIVIII   + +ININ+
Sbjct: 91  ITILFIVIIIIIKDNNININI 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,121,667
Number of Sequences: 59808
Number of extensions: 361797
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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