BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30700 (689 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 33 0.17 SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17 SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 3.6 SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 28 8.2 SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) 28 8.2 SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3) 28 8.2 >SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) Length = 815 Score = 33.5 bits (73), Expect = 0.17 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +2 Query: 443 KQLAVLARFAGHLKLTLLFIVIIITESNTHININLSMKYMY 565 K+LA A A ++V++I +SNTHI N+S+K +Y Sbjct: 111 KRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLKDLY 151 >SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1295 Score = 33.5 bits (73), Expect = 0.17 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +2 Query: 443 KQLAVLARFAGHLKLTLLFIVIIITESNTHININLSMKYMY 565 K+LA A A ++V++I +SNTHI N+S+K +Y Sbjct: 865 KRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLKDLY 905 >SB_18330| Best HMM Match : rve (HMM E-Value=1.2e-16) Length = 997 Score = 29.1 bits (62), Expect = 3.6 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = -3 Query: 369 VTTQFVDISLR-KFTNQQALWHIYYCSYTR*CDKTRTKIYVRFFFIVYKT*SYTARCGK- 196 ++T F+D ++ + Q+AL + Y R R I RF + Y TARCGK Sbjct: 77 ISTVFLDYQVKVDISTQKALVELLKRRYKRQPRLNRDAI-TRFLALSYTVTPRTARCGKA 135 Query: 195 RRDT 184 +RDT Sbjct: 136 KRDT 139 >SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) Length = 972 Score = 27.9 bits (59), Expect = 8.2 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -3 Query: 351 DISLRKFTNQQALWHIYYCSYTR*CDKTRTKIYVRFFFIVYKT*SYTARCGKR 193 D+ + N W +Y Y + C RTK+ + FF++ +Y CG R Sbjct: 359 DVKAEQPLNAAPSWSVY-SEYLKACGGVRTKVGI-LFFLLGSQPNYAEICGLR 409 >SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) Length = 656 Score = 27.9 bits (59), Expect = 8.2 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = +2 Query: 485 LTLLFIVIIITESNTHININL 547 +T+LFIVIII + +ININ+ Sbjct: 405 ITILFIVIIIIIKDNNININI 425 >SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3) Length = 166 Score = 27.9 bits (59), Expect = 8.2 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = +2 Query: 485 LTLLFIVIIITESNTHININL 547 +T+LFIVIII + +ININ+ Sbjct: 91 ITILFIVIIIIIKDNNININI 111 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,121,667 Number of Sequences: 59808 Number of extensions: 361797 Number of successful extensions: 579 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 524 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 579 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1793485733 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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