Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30697
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)                 33   0.080
SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)                   28   2.3  
SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)                    27   3.0  
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)                   27   3.0  
SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)                 27   3.0  
SB_35506| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    26   7.0  
SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)         26   9.2  
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)
          Length = 469

 Score = 32.7 bits (71), Expect = 0.080
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  TPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 154
           T LT+   ++ RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 36  TKLTKEEGEIQRNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 80


>SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)
          Length = 229

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 154
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 186 RNVIRERAKFHQRSQIPGESAESFIRNLYELAEY 219


>SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)
          Length = 189

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 154
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 129 RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 162


>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
          Length = 664

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 154
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)
          Length = 327

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 154
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_35506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 4  KRKDDYPIDSHLKQIGQKCGN 66
          K+KDD P+DS +K+I Q   N
Sbjct: 34 KQKDDEPVDSFIKKITQALVN 54


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 128 ECRRVDSRQEYRR*NGFSRNSLPHFCPICL 39
           ECRR+   +  R  N F R+++ H  P+ L
Sbjct: 194 ECRRLSREEIERERNNFFRSTVSHGSPLSL 223


>SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)
          Length = 466

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 19  YPIDS-HLKQIGQKCGNEFREKPF*RRYSWRES 114
           +P+   HLK IG K G EF       +  WRES
Sbjct: 415 FPVTGDHLKSIGLKPGPEFGRTLSQLKQMWRES 447


>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 8   VKMITPLTRISNK-LGRNVVTNFVRNHSNGG 97
           V ++ P  R  N+ +G+    NFV  H NGG
Sbjct: 123 VNLLLPAHRNKNRFIGKVAEVNFVEIHQNGG 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,724
Number of Sequences: 59808
Number of extensions: 188258
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)