Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30694
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14030.1 68418.m01640 translocon-associated protein beta (TRA... 49 3e-06
At3g11550.1 68416.m01409 integral membrane family protein simila... 31 0.98
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 1.3
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 1.3
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.3
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.0
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 28 6.9
At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate synth... 27 9.1
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 27 9.1
At1g74240.1 68414.m08598 mitochondrial substrate carrier family ... 27 9.1
>At5g14030.1 68418.m01640 translocon-associated protein beta (TRAPB)
family protein low similarity to SP|P23438
Translocon-associated protein, beta subunit precursor
(TRAP-beta) (Signal sequence receptor beta subunit)
{Canis familiaris}; contains Pfam profile PF05753:
Translocon-associated protein beta (TRAPB)
Length = 195
Score = 48.8 bits (111), Expect = 3e-06
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Frame = +2
Query: 65 AKLLYFVLFIAAAVSAD--DEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVE 238
AKLL + + VSA V ++ K LN+ + V Y ++N GS+ A +
Sbjct: 6 AKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYD 65
Query: 239 VKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYK-AS 415
V L DN + F VV G + +R+ +SH + + + G F + A VT++ +
Sbjct: 66 VTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIPT 125
Query: 416 EDATDVQYSISSAP 457
+ A YS P
Sbjct: 126 KPALQEAYSTPLLP 139
>At3g11550.1 68416.m01409 integral membrane family protein similar
to unknown protein GB:AAD26967 [Arabidopsis thaliana];
contains TIGRFAM TIGR01569 : plant integral membrane
protein TIGR01569; contains Pfam PF04535 : Domain of
unknown function (DUF588)
Length = 204
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 71 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 250
L +F F+ S DD P +++ ++ YLV ++ I V L + +AP + + ++
Sbjct: 72 LPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISVVTILRPLATAPRLLLLVL 131
Query: 251 DNG 259
D G
Sbjct: 132 DTG 134
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 585 DEYQRPNGMARDGRVITANAAQSR 514
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 585 DEYQRPNGMARDGRVITANAAQSR 514
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 585 DEYQRPNGMARDGRVITANAAQSR 514
D + NG DGRVIT N AQSR
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 335 VSHVVTVRSNKYGYFNFSSAEVTYKASEDATDV 433
+S +T RS YG+ F A+ +A ED+T +
Sbjct: 49 ISDKLTRRSKGYGFVTFKDAKAATRACEDSTPI 81
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 80 FVLFIAAAVSADDEPVLARLLVSKQVLN 163
++LF+ A+S PVLAR+L +++N
Sbjct: 165 YILFLGVALSVTAFPVLARILAELKLIN 192
>At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
ACC synthases from Arabidopsis thaliana [GI:940370],
Lycopersicon esculentum [GI:508609], Cucumis sativus
[GI:3641649]
Length = 470
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 621 FLGFESFSYLLFDEYQRPNGMARDG 547
FLG+E + +DE + PNGM + G
Sbjct: 20 FLGWEEYEKNPYDEIKNPNGMIQMG 44
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 377 NSRTYWTGQSLHGIH*FEVQSYRFPR 300
NS+ +W G + H + E +SYR+ R
Sbjct: 242 NSKNWWEGSAYHQLSPVEARSYRWVR 267
>At1g74240.1 68414.m08598 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 364
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 448 ADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYS 278
A + D G F C+ + ++I G S + YIS P+ RG + YY+
Sbjct: 136 AGAVGDTLGSFIYVPCEVIKQRMQIQ---GTSSSWSSYISRNSVPVQPRGDMYGYYT 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,792
Number of Sequences: 28952
Number of extensions: 285835
Number of successful extensions: 767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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