Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30690
         (318 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB6E78 Cluster: PREDICTED: similar to DNA excisi...    40   0.008
UniRef50_UPI0000E463E2 Cluster: PREDICTED: similar to excision r...    40   0.014
UniRef50_UPI00015B6064 Cluster: PREDICTED: similar to hCG32740; ...    39   0.019
UniRef50_Q03468 Cluster: DNA excision repair protein ERCC-6; n=2...    38   0.057
UniRef50_Q54TY2 Cluster: SNF2-related domain-containing protein;...    36   0.17 
UniRef50_Q6CBQ0 Cluster: Yarrowia lipolytica chromosome C of str...    32   2.8  
UniRef50_A7E474 Cluster: Putative uncharacterized protein; n=2; ...    31   6.6  
UniRef50_UPI0000E87CD9 Cluster: excinuclease ABC, C subunit; n=1...    30   8.7  
UniRef50_Q559C0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_UPI0000DB6E78 Cluster: PREDICTED: similar to DNA excision
           repair protein ERCC-6 (ATP-dependent helicase ERCC6)
           (Cockayne syndrome protein CSB); n=1; Apis
           mellifera|Rep: PREDICTED: similar to DNA excision repair
           protein ERCC-6 (ATP-dependent helicase ERCC6) (Cockayne
           syndrome protein CSB) - Apis mellifera
          Length = 932

 Score = 40.3 bits (90), Expect = 0.008
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +1

Query: 25  SKNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVV 129
           S  E  K   DD YVL KLFAKA V +A QH+ V+
Sbjct: 850 SLTEESKSIEDDQYVLEKLFAKANVTSAFQHETVL 884


>UniRef50_UPI0000E463E2 Cluster: PREDICTED: similar to excision
           repair protein, partial; n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to excision repair
           protein, partial - Strongylocentrotus purpuratus
          Length = 973

 Score = 39.5 bits (88), Expect = 0.014
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 28  KNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVV 129
           ++E  K  ++D+YVL KLF K+ V +ALQHD ++
Sbjct: 717 EDETTKNADEDNYVLQKLFKKSGVHSALQHDNIM 750


>UniRef50_UPI00015B6064 Cluster: PREDICTED: similar to hCG32740; n=1;
            Nasonia vitripennis|Rep: PREDICTED: similar to hCG32740 -
            Nasonia vitripennis
          Length = 1131

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 49   TNDDDYVLNKLFAKAAVKNALQHDVVV 129
            T DD YVL+KLF+KAAV +A QH+ V+
Sbjct: 1053 TADDQYVLSKLFSKAAVSSAFQHESVL 1079


>UniRef50_Q03468 Cluster: DNA excision repair protein ERCC-6; n=25;
            Euteleostomi|Rep: DNA excision repair protein ERCC-6 -
            Homo sapiens (Human)
          Length = 1493

 Score = 37.5 bits (83), Expect = 0.057
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 10   KKKDYSKNEVKKQTNDDDYVLNKLFAKA-AVKNALQHDVVV 129
            K+   +K+E K+Q+NDD YVL KLF K+  V + ++HD ++
Sbjct: 1233 KQDSENKSEAKEQSNDD-YVLEKLFKKSVGVHSVMKHDAIM 1272


>UniRef50_Q54TY2 Cluster: SNF2-related domain-containing protein; n=2;
            Eukaryota|Rep: SNF2-related domain-containing protein -
            Dictyostelium discoideum AX4
          Length = 1655

 Score = 35.9 bits (79), Expect = 0.17
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 19   DYSKNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVV 129
            D   N      NDD Y+L  LF K  +K+AL+HD ++
Sbjct: 1386 DIDGNNSPSGENDDSYILKCLFEKEGLKSALKHDTIM 1422


>UniRef50_Q6CBQ0 Cluster: Yarrowia lipolytica chromosome C of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome C of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 1085

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = +1

Query: 4   KVKKKDYSKNEVKKQTND---DDYVLNKLFAKAAVKNALQHDVVV 129
           K++K +  + E + ++ND   DD +LN +F++  V +AL+HD ++
Sbjct: 851 KLEKFENGEEE-RAESNDGDNDDNILNDIFSQTGVHSALEHDAIM 894


>UniRef50_A7E474 Cluster: Putative uncharacterized protein; n=2;
            Pezizomycotina|Rep: Putative uncharacterized protein -
            Sclerotinia sclerotiorum 1980
          Length = 1103

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 10/33 (30%), Positives = 24/33 (72%)
 Frame = +1

Query: 31   NEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVV 129
            +E K++ N++  ++  +FA++ V +AL+HD ++
Sbjct: 988  SEEKEKDNEESRLMEGIFARSGVHSALEHDQII 1020


>UniRef50_UPI0000E87CD9 Cluster: excinuclease ABC, C subunit; n=1;
           Methylophilales bacterium HTCC2181|Rep: excinuclease
           ABC, C subunit - Methylophilales bacterium HTCC2181
          Length = 580

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +1

Query: 4   KVKKKDYSKNEVKKQTNDDDY-----VLNKLFAKAAVKNALQHDVVV 129
           +++ KDY K  +K  T  DDY     VL + F + A ++A++ D+V+
Sbjct: 393 EMQNKDYRKYNIKNITPGDDYGAMKQVLERRFKRMAEEDAIKPDLVL 439


>UniRef50_Q559C0 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1513

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = +1

Query: 4    KVKKKDYSKNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVV 129
            K+  +DY+ +E+  Q ND+D +L+K+   + +    Q+D+++
Sbjct: 1339 KIILEDYNSDEINNQ-NDNDDLLSKISNYSCIFETCQNDIII 1379


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,015,920
Number of Sequences: 1657284
Number of extensions: 2019306
Number of successful extensions: 7205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7193
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)