Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30690
         (318 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55325.1 68414.m06320 expressed protein                             27   2.1  
At3g29075.1 68416.m03637 glycine-rich protein                          27   3.6  
At4g23570.2 68417.m03396 phosphatase-related low similarity to p...    26   4.8  
At4g23570.1 68417.m03395 phosphatase-related low similarity to p...    26   4.8  
At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A...    26   4.8  
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat...    26   6.3  
At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    26   6.3  
At3g18720.1 68416.m02377 F-box family protein contains Pfam PF00...    25   8.3  

>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 31   NEVKKQTNDDDYVLNKLFAKAAVKNAL 111
            +EV      DD++++K F K AV NA+
Sbjct: 1035 SEVNGVNISDDFIIDKYFGKQAVSNAI 1061


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +1

Query: 1   KKVKKKDYSKNEVKKQT---NDDD 63
           KK KKKDY+ ++ KK+    NDDD
Sbjct: 205 KKKKKKDYNDDDEKKKKKHYNDDD 228


>At4g23570.2 68417.m03396 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 1   KKVKKKDYSKNEVKKQTNDD----DYVLNKLF 84
           KKVK  D  + EVKKQ  D+    D  LNK F
Sbjct: 265 KKVKDWDKLEAEVKKQEKDEKLEGDAALNKFF 296


>At4g23570.1 68417.m03395 phosphatase-related low similarity to
           phosphoprotein phosphatase [Mus musculus] GI:567040;
           contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
           domain, PF04969: CS domain
          Length = 350

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 1   KKVKKKDYSKNEVKKQTNDD----DYVLNKLF 84
           KKVK  D  + EVKKQ  D+    D  LNK F
Sbjct: 265 KKVKDWDKLEAEVKKQEKDEKLEGDAALNKFF 296


>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
           ADP-ribosyltransferase / poly[ADP-ribose] synthetase
           (APP) identical to  SP|Q11207 Poly [ADP-ribose]
           polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
           ribosyltransferase) (Poly[ADP-ribose] synthetase)
           {Arabidopsis thaliana}
          Length = 637

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 13  KKDYSKNEVKKQTNDDDYVLNKLFA 87
           KK+ SK++ K+ +++D Y  NKL A
Sbjct: 41  KKEESKSKRKRNSSNDTYESNKLIA 65


>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
           similar to to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 853

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   VKKKDYSKNEVKKQTNDDDYVLNK 78
           V  K YS  +VKK TN  D+V+ K
Sbjct: 504 VMLKRYSFEKVKKMTNSFDHVIGK 527


>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 155 CFFSLSAKPTTTS 117
           CFFS SA PTTT+
Sbjct: 51  CFFSTSAMPTTTA 63


>At3g18720.1 68416.m02377 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 380

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 146 SLSAKPTTTSCCNAFFT 96
           + SA PT+TSCC   FT
Sbjct: 179 TFSAAPTSTSCCVISFT 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,923,901
Number of Sequences: 28952
Number of extensions: 44022
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)