Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30684
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14920.1 68415.m01697 sulfotransferase family protein similar...    32   0.47 
At4g26450.1 68417.m03805 expressed protein                             31   0.83 
At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family...    31   1.1  
At2g01100.3 68415.m00018 expressed protein                             31   1.1  
At2g01100.2 68415.m00017 expressed protein                             31   1.1  
At2g01100.1 68415.m00016 expressed protein                             31   1.1  
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,...    29   2.5  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At5g13260.1 68418.m01523 expressed protein                             29   4.4  
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At5g22480.1 68418.m02623 zinc finger (ZPR1-type) family protein ...    28   5.8  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    28   5.8  
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    28   5.8  

>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 519 QPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPD 632
           Q +K+ ++ + + L HHNPH   P  + +L L+   PD
Sbjct: 91  QRSKHSLEDHQHPLLHHNPHEIVPNLELDLYLKSSKPD 128


>At4g26450.1 68417.m03805 expressed protein
          Length = 1248

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
 Frame = +3

Query: 564  HHNPHAEAPKPKPELKLEIRNPDP----LRRTNQPLNVK-----DLETRTSQSDKSQGAT 716
            HH   +EA  P PE+   + N +     L  T   L VK     DLE+ T+QS  S G T
Sbjct: 1012 HHEQVSEANSPHPEIVTLVNNVEQLENMLEETRSMLEVKESHIRDLESTTNQSKHSWGGT 1071


>At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family
           protein
          Length = 126

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 558 LTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPL 659
           +T  NP +  P+P PE   +  +P P   TN+P+
Sbjct: 21  ITTSNPESSPPRPFPESSRKHDSPPPRASTNEPM 54


>At2g01100.3 68415.m00018 expressed protein
          Length = 247

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +2

Query: 476 MQRKSLLEIFKAKVPASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPT 655
           M  K  +++ + K     E +EA P   +    +  +A+ +T T+ + +K G  +     
Sbjct: 1   MDCKKFIQMVEEKKRRVLEKQEA-PLKWEQKLEAAANAKADTETKVKRSK-GPKRKQRAA 58

Query: 656 SQREGLRDQNLTVG*KSRRNHAKDDKH 736
           S+     D +  V  KSRR+H K  +H
Sbjct: 59  SESSSESDSSSEVRRKSRRSHNKHRRH 85


>At2g01100.2 68415.m00017 expressed protein
          Length = 247

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +2

Query: 476 MQRKSLLEIFKAKVPASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPT 655
           M  K  +++ + K     E +EA P   +    +  +A+ +T T+ + +K G  +     
Sbjct: 1   MDCKKFIQMVEEKKRRVLEKQEA-PLKWEQKLEAAANAKADTETKVKRSK-GPKRKQRAA 58

Query: 656 SQREGLRDQNLTVG*KSRRNHAKDDKH 736
           S+     D +  V  KSRR+H K  +H
Sbjct: 59  SESSSESDSSSEVRRKSRRSHNKHRRH 85


>At2g01100.1 68415.m00016 expressed protein
          Length = 247

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +2

Query: 476 MQRKSLLEIFKAKVPASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPT 655
           M  K  +++ + K     E +EA P   +    +  +A+ +T T+ + +K G  +     
Sbjct: 1   MDCKKFIQMVEEKKRRVLEKQEA-PLKWEQKLEAAANAKADTETKVKRSK-GPKRKQRAA 58

Query: 656 SQREGLRDQNLTVG*KSRRNHAKDDKH 736
           S+     D +  V  KSRR+H K  +H
Sbjct: 59  SESSSESDSSSEVRRKSRRSHNKHRRH 85


>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
           putative (RPL27) identical to SP|Q9FLN4 ribosomal
           protein L27, chloroplast precursor {Arabidopsis
           thaliana}; similar to SP|P30155 50S ribosomal protein
           L27, chloroplast precursor (CL27) {Nicotiana tabacum}
          Length = 198

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 510 QKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTN 650
           +KF P + ++  YP ++   NP++   + +   +L+ R     RR N
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQ-REKKKARREN 172


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 90   ENVHGALEITEREMSGFVCVLILAGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCN 269
            E    +++  E   S ++C +        ++T+  + CG ++C+   +CS   +RC  C 
Sbjct: 4642 ERAEASMKEAETAKSQWLCQI--CQTKEVEVTI--VPCGHVLCR---HCSTSVSRCPFCR 4694

Query: 270  VVCNKT 287
            +  N+T
Sbjct: 4695 LQVNRT 4700


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 570 NPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQ 692
           NP +   KPKP     +  P  + R++ P N   +  R SQ
Sbjct: 105 NPSSTIAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQ 145


>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 522 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 635
           P  N V QYP    HH P    P P  +  L+   P P
Sbjct: 59  PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96


>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 388

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 522 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 635
           P  N V QYP    HH P    P P  +  L+   P P
Sbjct: 59  PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96


>At5g22480.1 68418.m02623 zinc finger (ZPR1-type) family protein
           contains Pfam doamin, PF03367: ZPR1 zinc-finger domain
          Length = 493

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 570 NPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 728
           NPHA +P P   +K   R P+         N     ++  QS+ S GA + KT
Sbjct: 193 NPHAPSPDPSLTIKFYERTPEQQATLGYVAN----PSQAGQSEGSLGAPSTKT 241


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +2

Query: 479 QRKSLLEIFKAKVPASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPTS 658
           ++K + E  K +VP  +  RE V       QP     ET++ ++   TKP +    +P +
Sbjct: 98  KQKVVPEESKQEVPPEESKREVVV------QPESAKPETKSESKPETTKPETTSETKPET 151

Query: 659 QREGLRDQNL 688
           + E  + +++
Sbjct: 152 KAEPQKPKHM 161


>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 543 QYPNDLTHHNPHAEAP-KPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATT 719
           QY N L   NP   +     P+L+  ++NPD LR+ + P  ++ +   T Q   SQ   T
Sbjct: 405 QYMNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQM--MTLQQSLSQNRNT 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,249
Number of Sequences: 28952
Number of extensions: 306056
Number of successful extensions: 949
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)