Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30682
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 31 0.64
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 28 4.5
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 28 6.0
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058) 28 6.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.0
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09) 27 7.9
SB_41629| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 27 7.9
SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11) 27 7.9
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 7.9
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 27 7.9
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 7.9
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 354 LELTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTL 503
L+L SSL T++ LAP S TTT A +++L D SSL+ S+ L
Sbjct: 362 LKLAPFSSLTTAIKLAP----FSSLTTTLQACSLLLPYYDPSSLLPSLPL 407
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 31.1 bits (67), Expect = 0.64
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +3
Query: 363 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTT 542
T A+S+ + A A + + TTTA AAT T T++ T+ T A V + T+ T
Sbjct: 118 TAAASVAATAAAAATAAATATATTTATAATATAAATATATGTTTAT-ATVTATATATVTA 176
Query: 543 AGAA 554
A A
Sbjct: 177 AATA 180
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 372 SSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDT-SSLITSVTLAPVEDSITSFTTTAG 548
SS +TSV P + S T + + + ++ SS +TSVT P +TS T +
Sbjct: 961 SSQVTSVTQNPPSSQVTSVTQESHSTQVTSATQESRSSQVTSVTQEPPSSQVTSVTQESR 1020
Query: 549 AAPI 560
++ +
Sbjct: 1021 SSQV 1024
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 372 SSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDT-SSLITSVTLAPVEDSITSFT 536
SS +TSV P + S T + + + ++ SS +TSVT P +TS T
Sbjct: 889 SSQVTSVTQEPPSSQVTSVTQESPSTQVTSATQESPSSQVTSVTQEPPSTQVTSVT 944
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.9 bits (64), Expect = 1.5
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Frame = +3
Query: 177 STVGDPVVIAVSASGAVTITASGTASARIFVLKSCGASV-FKXXXXXXXXXXXXXXXXXX 353
STV V +A+ VT T + ASA V + A+V
Sbjct: 187 STVTATVTATATATATVTATVTAAASATAAVTATVTATVTVTVTATAATTVTATVTAATT 246
Query: 354 LELT---NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSI 524
+ +T A++ +T A V ++ + T T+ + T T ++I +VT A + ++
Sbjct: 247 VTVTVTATAATTVTVTVTATVTATVTATVTVTATTTVTVTATATVTVIVTVT-ATLAVTV 305
Query: 525 TSFTTTAGAA 554
T T TA AA
Sbjct: 306 T-VTETAAAA 314
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 360 LTNASSLITSVALAPVEDSIGSFTTTAGAAT---IVLEPTDTSSLITSVTLAPVEDSITS 530
+TNA + T+ LA + + TTT A+T + T TS T+ T E + T+
Sbjct: 219 MTNAPKITTTEQLATTTAAETTPTTTTSASTTTATTTKATTTSVSTTTATTKEEESTTTA 278
Query: 531 FTTTAGA 551
TTT A
Sbjct: 279 ETTTVTA 285
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 363 TNASSLITSVALAPVEDSIGSFT-TTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTT 539
T + + TS P S+T TT+ +T PT + + TS T S TS+TT
Sbjct: 23 TTSYTSTTSYTPTPSYTPTTSYTSTTSYTSTTSYTPTPSYTPTTSYTTTTSYTSTTSYTT 82
Query: 540 TAGAAP 557
T P
Sbjct: 83 TTSYTP 88
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 369 ASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTA 545
+S TS P+E S+ + +TT+ A V + TSV + +E S+ + +TT+
Sbjct: 487 SSMATTSTTSTPLESSMTTNSTTSTLAEAVATSSPVLPTTTSVLTSSMESSMATTSTTS 545
>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 363 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTT 542
T +S TS + S + TTT+ T T TS+ TS T + + + TTT
Sbjct: 10 TTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTT 69
Query: 543 A 545
+
Sbjct: 70 S 70
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 363 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTT 542
T +S TS + S + TTT+ T T TS+ TS T + + + TTT
Sbjct: 23 TTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTSTTNTSTTT 82
Query: 543 A 545
+
Sbjct: 83 S 83
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 538 VVNDVIESS-TGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATE 386
+V++ IE++ G +VTE D + V P+ VN P ++ TG S E
Sbjct: 841 LVSEAIEANKNGETVTEPDPDPEEPKKMSTVEPPSAGVNKPEDTPTGGSRAE 892
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 446 CNNSFGTHRYLIINYFGNTCSR*RLNYIIYNNSRCCTN 559
C N+ G R L IN G+ + R Y++ N+++ C N
Sbjct: 272 CQNNNGGCRDLCINTPGSFMCQCRQGYVLANDNKTCIN 309
>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
Length = 1083
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = -2
Query: 559 IGAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 380
I AA +V VI ++T V V+ V T+V A VVV ++T SA V+
Sbjct: 769 IVAATVIVAATVIVAATVVVVATVVVVATVVVVATVVVAATVVV--VAAAATATSAVAVV 826
Query: 379 NDEALVSS 356
D SS
Sbjct: 827 IDTVAASS 834
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 372 SSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGA 551
S+L+ AP + ++ TT T + P T +T T APV+ T TTA A
Sbjct: 1642 STLVPETTFAP-DTTVAPETTVMPDTT--MRPPKTDVFVTEATKAPVDQLKTKQPTTATA 1698
>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 384 TSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGA 551
++ L+ V +I + A T +L+P T++++ A + + T+ TTA A
Sbjct: 155 SATELSTVVKTISTTKLQPVATTTILQPVATTTILVEAATATITTTTTAEATTARA 210
>SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)
Length = 549
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 341 YFNSFRAHQCLVINYFG--STCSR*RLNWIIYNHSRCCNNSFGTHRYLIINYFGNTCSR* 514
Y N +CL I Y T S R+NW + + + F L I + G+ S
Sbjct: 181 YTNDDCGEKCLTIIYSVPMGTTSETRVNWFWFTRTVPGHYEFPIDFELYIQHEGSNVSNW 240
Query: 515 RLNYIIYNNSR 547
+ I+YN+ +
Sbjct: 241 NVEKIVYNDQK 251
>SB_41629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 405 VEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSIT 527
+E SIGS + A + LE + + L T+A + DSIT
Sbjct: 119 MEHSIGSIVSKIDAVLVKLEAMEKAKLKRRETMAKLLDSIT 159
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 517 SSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALVSS 356
S++ A+ T + VS S + A+ ++ P + A+ATE +DEA++ S
Sbjct: 148 STSSAASTSLTTSPVSTSSTSSAASTSLT---PAPNILSAAATECYSDEAIIPS 198
>SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)
Length = 632
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 341 YFNSFRAHQCLVINYFG--STCSR*RLNWIIYNHSRCCNNSFGTHRYLIINYFGNTCSR* 514
Y N +CL I Y T S R+NW + + + F L I + G+ S
Sbjct: 307 YTNDDCGEKCLTIIYSVPMGTTSETRVNWFWFTRTVPGHYEFPIDFELYIQHEGSNVSNW 366
Query: 515 RLNYIIYNNSR 547
+ I+YN+ +
Sbjct: 367 NVEKIVYNDQK 377
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 354 LELTNASSLITSVALAPVEDSIGSFTTTAGAATI----VLEPTDTSSLITSVTLAPVEDS 521
++ TN+ T L+ D++G+ TT A +A I +P D SS+ITS V +
Sbjct: 792 IDNTNSQKSDTDRKLS--SDTLGTLTTMAISAAISSSSATKPLDVSSVITSEFTKAVAST 849
Query: 522 ITSFT 536
I + T
Sbjct: 850 IMTIT 854
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 363 TNASSLITSVAL-APVEDSIGSFTTTAGAATIVLEPTDTSS 482
+NA++++T +A APV D I TTT TIVL T +
Sbjct: 573 SNATAMVTIIAFTAPVFDVIQPNTTTNETDTIVLHCNATGN 613
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 381 ITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAAP 557
+T + +I TTTA I + T T ++IT++T+ +IT+ T A P
Sbjct: 249 VTITITTTIAIAIAITTTTATPTAITITITTTITIITTITITTT--TITTAITITTATP 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,081
Number of Sequences: 59808
Number of extensions: 246692
Number of successful extensions: 835
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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