Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30680
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)          85   6e-17
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)           29   4.3  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  29   4.3  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     29   5.7  
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     28   7.6  
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        28   7.6  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 2/193 (1%)
 Frame = +2

Query: 212 MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 391
           MK  ANLS +F E   ++ER   A  AGF  VE  FP+     +++ A ++AG+    IN
Sbjct: 1   MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59

Query: 392 LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 565
           L  GD   G  G+ ++P ++ EF   L   + YA  +    ++++ G++ +   P+    
Sbjct: 60  LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119

Query: 566 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 745
               NL    +  +   I  ++E IN   +P + ++   +   ++K +  PNL    D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179

Query: 746 HLQQIAGDITHNI 784
           H+ +   D+   I
Sbjct: 180 HMARQGLDVQAGI 192


>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 428 VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 598
           + SV   E+ ++ +L+ +++ +KA  ++ + +M GK  +PT + W+T   F  N L+  +
Sbjct: 84  ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142

Query: 599 VLKGENI 619
             K  NI
Sbjct: 143 TDKDSNI 149


>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
          Length = 274

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 763 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 668
           S LL   N  H S++WT    N  H+SS+ TQ
Sbjct: 31  SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 763 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 668
           S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 188 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 160  VNSIIYIRIVYVVEPF-TIK*DQK*LTQL*FTVFIVGYV*TNIIKY 26
            ++SII+IR  Y   P  T + D+K L QL F + +VGY+ +  + Y
Sbjct: 1093 ISSIIFIRNGYCSTPTKTKRKDKKGLPQLCFLLVLVGYLSSATLMY 1138


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 683 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 778
           R + ++K+ID+   PN+  +LDIFH+  +    TH
Sbjct: 52  REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86


>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 763 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 668
           S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 155 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 313 RFYSLKSSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 200
           R +S  +   S S S +NG+S + H RQ++  + ++KI
Sbjct: 285 RQHSSATGCSSNSTSRKNGKSSATHNRQMTNGYSHSKI 322


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 160 VNSIIYIRIVYVVEPF-TIK*DQK*LTQL*FTVFIVGYV 47
           ++SII+IR  Y   P  T + D+K L QL F + +VGY+
Sbjct: 15  ISSIIFIRNGYCSTPTETKRKDKKGLPQLCFLLVLVGYL 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,755,624
Number of Sequences: 59808
Number of extensions: 411268
Number of successful extensions: 1220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)