Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30680
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa...    33   0.29 
At4g10080.1 68417.m01649 expressed protein                             31   0.88 
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   2.0  
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ...    28   6.2  
At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family pr...    28   6.2  
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    28   8.2  
At2g16860.1 68415.m01939 GCIP-interacting family protein similar...    28   8.2  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    28   8.2  

>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 332

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/37 (37%), Positives = 26/37 (70%)
 Frame = -2

Query: 298 KSSVFSQSISFQNGRSFSKHKRQISTEFHYNKILYDL 188
           KS   ++S+S ++ +S +KHKRQ +T+   + I+YD+
Sbjct: 237 KSQDLTESLSDESSKSDAKHKRQYATDHTQDFIVYDV 273


>At4g10080.1 68417.m01649 expressed protein
          Length = 325

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
 Frame = +2

Query: 248 EASSILERYALAKD---AGFKAVESGFPFGFSLE---QVRNAKQ---SAGLQQIAINLKT 400
           E+SS+++   +  D   A  + +ESG+   F ++   +  N  +    +GL Q +++   
Sbjct: 26  ESSSVIDDGMILSDHFSATDRVIESGYFDSFRVDYGSECLNPGEVSVDSGLDQFSVSQSG 85

Query: 401 GDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAG-KVENPTPKHWETFEK 577
            D  + E GV      E     +    +   +A + K +   A  ++   T  H+ET  +
Sbjct: 86  DDCVRNEFGVYD---SETGILGDGEVRLSDFEAANEKYVESEAATELTGGTVSHYET--E 140

Query: 578 NLLYAVDVLKGENIQGLIEPINQYS 652
           NL   VD   GEN  G+ EPI   S
Sbjct: 141 NLEEFVDGRHGENESGVEEPIEDSS 165


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 278 LAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGD---TTKGEVGVTSVPGK 448
           ++KD G+K+ E G   G S  +     +  G + + +     D    +  E  VT +PGK
Sbjct: 647 VSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGK 706

Query: 449 EDE 457
             E
Sbjct: 707 SSE 709


>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
           DREB2A GI:3738230 from [Arabidopsis thaliana] ;
           supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
          Length = 335

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 554 KHW-ETFEKNLLYAVDVLKG---ENIQGLIEPINQYSMPKYFLSDYGRAVDIIK-RIDSP 718
           KHW   FE N  Y  D+LK    +  QG++E   Q       ++DYG   D+ +  +DS 
Sbjct: 199 KHWLSEFEHN--YWSDILKEKEKQKEQGIVETCQQQQQDSLSVADYGWPNDVDQSHLDSS 256

Query: 719 NL 724
           ++
Sbjct: 257 DM 258


>At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 264

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 304 SLKSSVFSQSISFQNGRSFSKHKRQISTEFHYNKILYDLFSRL*EVNYV 158
           S K+ VF++S    +  +  KH++ I + FH+N   +D FS   E NY+
Sbjct: 53  SPKTRVFNESQELDSFHT-PKHQKLIDSSFHFNS--HDPFSPSPESNYL 98


>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 289 VFSQSISFQNGRSFSKHKRQISTEFHYNKI 200
           +F+  ++   G  +SKH++ I+  FH  K+
Sbjct: 139 LFATGVALYEGEKWSKHRKIINPSFHLEKL 168


>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
           GCIP-interacting protein mp29 (GI:27372623) [Mus
           musculus]; similar to GCIP-interacting protein P29
           (GI:11967379) [Homo sapiens]
          Length = 298

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 539 ENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQ 646
           + PTP  W+ F +  LY     + +NIQ  +E  N+
Sbjct: 169 KEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNR 204


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 437 VPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLYAVDVLKGEN 616
           VPG+ D  K + N T      L   K+H     V +      ET   N +Y  ++++  N
Sbjct: 28  VPGRSDSPKAHQNQTTNQTVFLKPAKVHDDDEDVSSEDEN--ETHNSNAVYYKEMIRKSN 85

Query: 617 IQ---GLIEPINQYS 652
            +    +++P ++Y+
Sbjct: 86  AELEPSVLDPRDEYT 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,826
Number of Sequences: 28952
Number of extensions: 304373
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)