Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30676
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42253| Best HMM Match : Usp (HMM E-Value=0.00023)                   29   2.1  
SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_20051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_42253| Best HMM Match : Usp (HMM E-Value=0.00023)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 338 CFAKSTTGSESRPTEKTRRETQWAVSME*FALCRNR---RIRSSRCF 207
           C  K    + +RPT+  R   + AVS+  +A  RN+   R+ S RCF
Sbjct: 225 CNLKQALHATTRPTDHKRHRQRKAVSVASYAPLRNKNQTRMASLRCF 271


>SB_53069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 496 LFTFLSRYIFKFYVLLLNKAVCTYQSPKK 582
           +FT LSR ++     L NK VCT  +PK+
Sbjct: 56  MFTTLSRDVYNTVTWLHNKRVCTKTTPKQ 84


>SB_20051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 557 TALFSNKT*NLNMYLLKKVK-RNTPNEF 477
           T   +NK  N+ +YLL+KVK RN  N F
Sbjct: 30  TCFAANKAVNMRLYLLQKVKLRNACNRF 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,299
Number of Sequences: 59808
Number of extensions: 281379
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)