Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30674
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    29   0.60 
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    26   5.6  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   7.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   7.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 919

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 350  WIWSWIAVCVLGTSYLTFSIADPVDRMVNSRLRPKHVITVPPDPLTVLLSTTSTGH 517
            W++S+   C++  +Y   S +   DRM+N + +         D L V L  TST H
Sbjct: 860  WMYSFGIFCIMAGTYYILSESAGFDRMMNGKPKESRNQRSIED-LVVALQRTSTRH 914


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 59  IYGHPDYDFGPYEPEN 106
           I GHP  D G  EPEN
Sbjct: 97  IKGHPSIDIGSIEPEN 112


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 572 WVNSLVEPFVASDGFDEDGDRCLWYLK 492
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 458 RVLGEVDCLPFCLQDRLWRTLNN 390
           +V G + CL F L D  +R LNN
Sbjct: 744 KVEGNMPCLSFILSDAQFRILNN 766


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 772 VLFFILPNLIALRGYFQCTXS 710
           +  F++ +++ L GYFQC+ S
Sbjct: 168 ICLFVINHILILLGYFQCSYS 188


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 6   SCLVLKKKKKIFSRKCLRSTVTPITISALMNPKTKVTR 119
           S  V+     I S   L S+ TPIT S ++N  T +TR
Sbjct: 554 SSTVVNTSTPITSSSVLNSS-TPITSSTVVNTSTPITR 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,321
Number of Sequences: 5004
Number of extensions: 55662
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)