Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30674
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281...    31   0.84 
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    31   0.84 
09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433     28   7.8  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   7.8  

>07_03_0546 -
           19325526-19326054,19327109-19327631,19327898-19328152,
           19328283-19328472,19328473-19328525,19329295-19329555,
           19329670-19329720,19329873-19330121,19330225-19330453,
           19332245-19332559
          Length = 884

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -3

Query: 327 FRKFYCTAYHLFHCSSRIGTRNIRIKKNY-----LLSDMILRQKKRNSQMRSI 184
           FR+    +YH+F C +R G ++IR K++Y     LL + + +  +R +Q RS+
Sbjct: 693 FRRVCPKSYHMFRCIARYGYKDIR-KEDYISFQQLLIESLEKFMRREAQERSL 744


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 378 TQTAIQDHIHLIFNIMYFRKFYCTAYHLFHCSSRIGTRNIRIKKNYLLSDMILRQKK 208
           T  ++++    ++ +  F+KF     H FHC+  I  RN  +   Y++SD I   KK
Sbjct: 560 TGVSVEEQAAKMYTLEIFQKFLDEIGHSFHCNYSILDRNESV-VTYIVSDHIDETKK 615


>09_03_0005 + 11411828-11411894,11412122-11412677,11413424-11413433
          Length = 210

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 329 YIILNIRWIWSWIAVCVLGTSYLTFSIADPVDRMVNSRLRPKHVIT 466
           Y  L + W  SW  VC++ T   T  ++    RM+ S L P HV+T
Sbjct: 142 YEALFVAWA-SWAPVCLINTGQGTPFVSSVELRMLGSELYP-HVMT 185


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 462 MTCFGRSRLFTILSTGSAMENVK*LVPSTQTAIQDHIHLIF 340
           ++C  RS+   +L   ++ E ++ + PS +  + D +HLIF
Sbjct: 474 LSCHARSKKVPLLKKYTSEEYLQLIFPSEEQWLDDLVHLIF 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,684
Number of Sequences: 37544
Number of extensions: 359841
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)