Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30674
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09400.1 68418.m01089 potassium transporter family protein si...    29   3.7  
At4g33530.1 68417.m04765 potassium transporter family protein si...    29   3.7  
At3g56950.1 68416.m06336 small basic membrane integral family pr...    29   3.7  
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    29   4.9  

>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -3

Query: 327 FRKFYCTAYHLFHCSSRIGTRNIRIKKNYLLSDMILRQK----KRNSQMRSI 184
           FR+    +YHLF C +R G ++ R + +     +++       +R +Q RS+
Sbjct: 660 FRRVCTKSYHLFRCIARYGYKDARKETHQAFEQLLIESLEKFIRREAQERSL 711


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 FRKFYCTAYHLFHCSSRIGTRNIRIKKNYLLSDMIL 220
           FR+    +YHLF C +R G +++R K+++   + IL
Sbjct: 661 FRRVCPRSYHLFRCVARYGYKDVR-KESHQAFEQIL 695


>At3g56950.1 68416.m06336 small basic membrane integral family
           protein contains similarity to small basic membrane
           integral protein ZmSIP2-1 (GI:13447817) [Zea mays]
          Length = 237

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 332 IILNIRWIWSWIAVCVLGTSYLTFSIADPVDRMV 433
           ++L+  WIW+ + V +L    L FS  DP   +V
Sbjct: 11  LVLSFMWIWAGVLVNILVHGVLGFSRTDPSGEIV 44


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 250 KKLFT**YDP*AKEEKQPDEKHYDQHHHVPKRHARQT 140
           K +FT   DP   E +    KH ++H H  + H  Q+
Sbjct: 5   KSVFTEDLDPPETESESDSPKHSEEHEHPEQEHPEQS 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,500
Number of Sequences: 28952
Number of extensions: 291477
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)