Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30671
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15860.2 68418.m01856 expressed protein 44 2e-04
At5g15860.1 68418.m01855 expressed protein 44 2e-04
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 43 3e-04
At5g23530.1 68418.m02761 expressed protein contains similarity t... 39 0.003
At3g27320.1 68416.m03414 expressed protein low similarity to PrM... 38 0.010
At1g49660.1 68414.m05569 expressed protein 38 0.010
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin... 37 0.017
At5g14310.1 68418.m01673 expressed protein low similarity to PrM... 36 0.030
At1g26120.1 68414.m03188 esterase-related contains similaity to ... 36 0.030
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin... 36 0.040
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 36 0.040
At3g05120.1 68416.m00556 expressed protein low similarity to PrM... 35 0.053
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin... 34 0.12
At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin... 33 0.16
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin... 33 0.16
At2g45600.1 68415.m05670 expressed protein low similarity to PrM... 33 0.28
At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pin... 33 0.28
At1g49650.1 68414.m05568 cell death associated protein-related s... 31 0.65
At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pin... 31 0.86
At5g13100.1 68418.m01501 expressed protein 30 1.5
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 30 1.5
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom... 30 2.0
At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pin... 30 2.0
At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) / m... 29 2.6
At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pin... 29 3.5
At1g19190.1 68414.m02389 expressed protein contains similarity t... 29 4.6
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 6.0
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f... 28 8.0
At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprote... 28 8.0
At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t... 28 8.0
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 43.6 bits (98), Expect = 2e-04
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Frame = +3
Query: 360 GDENCLFLNVYTPSTDGAFLPVMIWIHGG----GFK-WGSGNTNLYGPDFLVDRDVVVMT 524
GD+ L++Y PS + PV++++ GG G+K WGS L G L +RD++V
Sbjct: 136 GDQPRNRLDLYLPSNNDGLKPVVVFVTGGAWIIGYKAWGS----LLGMQ-LAERDIIVAC 190
Query: 525 INYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTYLV 680
++YR N P+ + + D Q I +V +NI FGG+ N YL+
Sbjct: 191 LDYR---------NFPQGTISDMVTDASQGISFVCNNISAFGGDP-NRIYLM 232
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 43.6 bits (98), Expect = 2e-04
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Frame = +3
Query: 360 GDENCLFLNVYTPSTDGAFLPVMIWIHGG----GFK-WGSGNTNLYGPDFLVDRDVVVMT 524
GD+ L++Y PS + PV++++ GG G+K WGS L G L +RD++V
Sbjct: 136 GDQPRNRLDLYLPSNNDGLKPVVVFVTGGAWIIGYKAWGS----LLGMQ-LAERDIIVAC 190
Query: 525 INYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTYLV 680
++YR N P+ + + D Q I +V +NI FGG+ N YL+
Sbjct: 191 LDYR---------NFPQGTISDMVTDASQGISFVCNNISAFGGDP-NRIYLM 232
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 42.7 bits (96), Expect = 3e-04
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Frame = +3
Query: 381 LNVYTPSTDGAFLPVMIWIHGG----GFK-WGSGNTNLYGPDFLVDRDVVVMTINYRCGA 545
L++Y P T PV++++ GG G+K WGS L G L +RD++V ++YR
Sbjct: 138 LDLYIPPTSDGLKPVVVFVTGGAWIIGYKAWGS----LLGLQ-LAERDIIVACLDYR--- 189
Query: 546 LGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTYLV 680
N P+ + + D Q I +V +NI FGG+ N YL+
Sbjct: 190 ------NFPQGTISDMVSDAAQGISFVCNNISAFGGDP-NRIYLM 227
>At5g23530.1 68418.m02761 expressed protein contains similarity to
PrMC3 [Pinus radiata] GI:5487873
Length = 335
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 330 IDPVFAKSYVGDENC-LFLNVYTPSTDGAFLPVMIWIHGGGFKWGSGNTNLYG---PDFL 497
++ V +V D++ L+ +YTP G +PV+++ HGGGF + S N Y F
Sbjct: 57 VNIVSTSDFVVDQSRDLWFRLYTPHVSGDKIPVVVFFHGGGFAFLSPNAYPYDNVCRRFA 116
Query: 498 VDRDVVVMTINYR 536
V+++NYR
Sbjct: 117 RKLPAYVISVNYR 129
>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 460
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 390 YTPSTDGAF---LPVMIWIHGGGFKWGSGNTNLYGPDFLVDR-----DVVVMTINYR 536
Y PS+ G LPVM+ HGGG W SG+ + DF R D++V+ + YR
Sbjct: 154 YAPSSSGGNSRKLPVMLQFHGGG--WVSGSNDSVANDFFCRRMAKHCDIIVLAVGYR 208
>At1g49660.1 68414.m05569 expressed protein
Length = 319
Score = 37.5 bits (83), Expect = 0.010
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Frame = +3
Query: 324 AQIDPVF---AKSYV-GDENCLFLNVYTPS-----TDGAFLPVMIWIHGGGFKWGSGNTN 476
A +DP + +K + EN L + ++ P T G LP++I+IHGG + S +
Sbjct: 32 ASLDPTYDVVSKDVIYSPENNLSVRLFLPHKSTKLTAGNKLPLLIYIHGGAWIIESPFSP 91
Query: 477 LYGPDFLVDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWV 626
LY ++L + VV + N C A+ PE P A +D+ AI+W+
Sbjct: 92 LY-HNYLTE---VVKSAN--CLAVSVQYRRAPEDPVPAAYEDVWSAIQWI 135
>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 336
Score = 36.7 bits (81), Expect = 0.017
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +3
Query: 375 LFLNVYTPSTDGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDV----VVMTINYRCG 542
L++ + T + + LP++++ HGGGF GS + Y +FL +VM++NYR
Sbjct: 75 LYVPMTTTKSSVSKLPLIVYFHGGGFCVGSASWLCY-HEFLARLSARSRCLVMSVNYRL- 132
Query: 543 ALGFLSLNTPEVPGNAGIKDIVQAIRWV 626
PE P A +D V AI W+
Sbjct: 133 --------APENPLPAAYEDGVNAILWL 152
>At5g14310.1 68418.m01673 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 446
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = +3
Query: 390 YTPST--DGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDR-----DVVVMTINYR 536
Y PS + LPVM+ HGGG W SG+++ DF R DV+V+ + YR
Sbjct: 140 YAPSAKRNSRKLPVMLQFHGGG--WVSGSSDSAANDFFCRRIAKVCDVIVLAVGYR 193
>At1g26120.1 68414.m03188 esterase-related contains similaity to
esterase 6 GI:606998 from [Drosophila simulans] and
esterase GI:12584120 from [Sphingomonas elodea]
Length = 476
Score = 35.9 bits (79), Expect = 0.030
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Frame = +3
Query: 336 PVFAKSYV-GDENCLFLNVYTPSTDGAFLPVMIWIHGG----GFK-WGSGNTNLYGPDFL 497
P +S V GD+ L++Y P PV+ ++ GG G+K WGS L G L
Sbjct: 178 PYVRRSIVYGDQPRNRLDLYLPKNSTGPKPVVAFVTGGAWIIGYKAWGS----LLGQQ-L 232
Query: 498 VDRDVVVMTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNLTYL 677
+RD++V I+YR N P+ + +KD I +V ++I +GG+ + YL
Sbjct: 233 SERDIIVACIDYR---------NFPQGSISDMVKDASSGISFVCNHIAEYGGDPDRI-YL 282
Query: 678 V 680
+
Sbjct: 283 M 283
>At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 405 DGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDV-----VVMTINYR 536
DG +PV+++ HGG F S N+ +Y D L R V VV+++NYR
Sbjct: 100 DGEIVPVIVFFHGGSFAHSSANSAIY--DTLCRRLVGLCGAVVVSVNYR 146
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 35.5 bits (78), Expect = 0.040
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +3
Query: 369 NCLFLNVYTPSTDGAF----LPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDV----VVMT 524
N + VY P A LP++++ HGGGF GS + Y DFL V V+++
Sbjct: 72 NDTWTRVYIPDAAAASPSVTLPLLVYFHGGGFCVGSAAWSCY-HDFLTSLAVKARCVIVS 130
Query: 525 INYRCGALGFLSLNTPEVPGNAGIKDIVQAIRW-VKDNIHHFGG 653
+NYR PE A D V + W VK I GG
Sbjct: 131 VNYRL---------APEHRLPAAYDDGVNVVSWLVKQQISTGGG 165
>At3g05120.1 68416.m00556 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 345
Score = 35.1 bits (77), Expect = 0.053
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 339 VFAKSYVGDENCLFLNVYTPSTDGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDV-- 512
V+ +Y E + DG +PV+++ HGG F S N+ +Y D L R V
Sbjct: 80 VYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIY--DTLCRRLVGL 137
Query: 513 ---VVMTINYR 536
VV+++NYR
Sbjct: 138 CKCVVVSVNYR 148
>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 358
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +3
Query: 381 LNVYTPSTDGAFLPVMIWIHGGGFKWGSGNTNLYGP---DFLVDRDVVVMTINYRCGALG 551
L + P + +PV+I+ HGG F S N+ +Y + VVV++++YR
Sbjct: 94 LELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYR----- 148
Query: 552 FLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFGGNAGNL 668
+PE D A+ WVK + G N+
Sbjct: 149 ----RSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNV 183
>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 339 VFAKSYVGDENCLFLNVYTP--STDGAFLPVMIWIHGGGFKWGS 464
+F S N L L +Y P +++ LPV+++ HGGGF +GS
Sbjct: 48 LFKDSIYHKPNNLHLRLYKPISASNRTALPVVVFFHGGGFCFGS 91
>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 329
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 339 VFAKSYVGDENCLFLNVYTP--STDGAFLPVMIWIHGGGFKWGS 464
+F S N L L +Y P +++ LPV+++ HGGGF +GS
Sbjct: 48 LFKDSIYHKPNNLHLRLYKPISASNRTALPVVVFFHGGGFCFGS 91
>At2g45600.1 68415.m05670 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 329
Score = 32.7 bits (71), Expect = 0.28
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +3
Query: 369 NCLFLNVYTPST--DGAFLPVMIWIHGGGFKWGSGNTNLYGPDF--LVDR-DVVVMTINY 533
N F+ ++ P + LP++++ HGGGF S + + + DR +++++ Y
Sbjct: 48 NNTFIRIFKPRNIPPESKLPILVYFHGGGFILYSAASAPFHESCTKMADRLQTIILSVEY 107
Query: 534 RCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKD 632
R PE A +D V+AI W++D
Sbjct: 108 RL---------APEHRLPAAYEDAVEAILWLRD 131
>At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 314
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Frame = +3
Query: 285 DGIRDATAEGNVCAQ-IDP---VFAKSYVGDENC-LFLNVYTPST--DGAFLPVMIWIHG 443
DG + A VC +DP VF+K + + L +Y P + G +P+M++ HG
Sbjct: 21 DGTVERLAGTEVCPPGLDPITGVFSKDIIIEPKTGLSARIYRPFSIQPGQKIPLMLYFHG 80
Query: 444 GGFKWGSGNTNLYGPDF--LVDR-DVVVMTINYR 536
G F S + Y +V++ +V+ +++NYR
Sbjct: 81 GAFLISSTSFPSYHTSLNKIVNQANVIAVSVNYR 114
>At1g49650.1 68414.m05568 cell death associated protein-related
similar to PrMC3 [Pinus radiata] GI:5487873; weak
similarity to cell death associated protein [Nicotiana
tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
GI:22830761
Length = 374
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 408 GAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDVVVMTINYRCGALGFLSLNTPEVPGN 587
G LP++I+ HGG + S + +Y +FL + VV + N C A+ PE P
Sbjct: 125 GNKLPLLIYFHGGAWINESPFSPIYH-NFLTE---VVKSAN--CLAVSVQYRRAPEDPVP 178
Query: 588 AGIKDIVQAIRWV 626
A +D AI+W+
Sbjct: 179 AAYEDTWSAIQWI 191
>At2g03550.1 68415.m00315 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873; contains an
esterase/lipase/thioesterase active site serine domain
(prosite: PS50187)
Length = 312
Score = 31.1 bits (67), Expect = 0.86
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 366 ENCLFLNVYTPS-TDGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDVVVMTINYRCG 542
E L L +Y P LP++I+ HGGGF + + P + V N C
Sbjct: 50 EKNLSLRIYLPEKVTVKKLPILIYFHGGGFIIETA----FSPPYHTFLTSAVAAAN--CL 103
Query: 543 ALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNI 638
A+ PE P +D +++WV +I
Sbjct: 104 AISVNYRRAPEFPVPIPYEDSWDSLKWVLTHI 135
>At5g13100.1 68418.m01501 expressed protein
Length = 354
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 357 VGDENCLFLNVYTPSTDGAFLPVMIWIHGGGFKWGSGNTNLYGP 488
V +ENC+F + P ++ +PV +++ G G W G + Y P
Sbjct: 295 VEEENCVFFLPHKPRSEVLEVPVFLFMKGTG--WCGGGADHYEP 336
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 274 GDCGALNRKEPNGGFAYGIPWKL*KAFPDGLFTIRPWSCP-CSTV 143
G GA + GG G P K P GLF W+CP C V
Sbjct: 171 GSMGAGRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNV 215
>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 728
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 256 NRKEPNGGFAYGIPWKL*KAFPDGLFTIRPWSCPCSTVT 140
N+K+ NGGF+ + +L + P+G+ I P S S V+
Sbjct: 137 NKKKSNGGFSEFVGEELTRVLPNGIMAISPPSPTTSNVS 175
>At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 324
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +3
Query: 354 YVGDENCLFLNVYTPSTDGAF----LPVMIWIHGGGFKWGSGNTNLYGPDFLVDRDVVVM 521
Y D N L + +Y P A LP++++ HGGGF + + P + V
Sbjct: 47 YSADNN-LSVRIYLPEKAAAETDSKLPLLVYFHGGGFIIETA----FSPTYHTFLTTSVS 101
Query: 522 TINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNI 638
N C A+ PE P + D A++WV +I
Sbjct: 102 ASN--CVAVSVDYRRAPEHPISVPFDDSWTALKWVFTHI 138
>At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) /
multidrug transporter-like protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296, putative multidrug efflux protein NorM -
Vibrio parahaemolyticus, EMBL:AB010463; contains Pfam
profile PF01554: Uncharacterized membrane protein
family; identical to cDNA multidrug transporter-like
protein (tt12) GI:13624642, SP|Q9LYT3 TRANSPARENT TESTA
12 protein {Arabidopsis thaliana}, multidrug
transporter-like protein [Arabidopsis thaliana]
GI:13624643
Length = 507
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 422 GHDLDPRWWVQVGIRQYQLVWT 487
G + PRWW+++ + + +L+WT
Sbjct: 36 GSTVTPRWWLKLAVWESKLLWT 57
>At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pinus
radiata, GI:5487873
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 417 LPVMIWIHGGGFKWGSGNTNLYGPDFL--VDRDV--VVMTINYRCGALGFLSLNTPEVPG 584
LP++++ HGGGF S + L+ DF V RD+ +V++ +YR PE
Sbjct: 80 LPIVVYYHGGGFILCSVDMQLF-HDFCSEVARDLNAIVVSPSYRL---------APEHRL 129
Query: 585 NAGIKDIVQAIRWVK 629
A D V+A+ W+K
Sbjct: 130 PAAYDDGVEALDWIK 144
>At1g19190.1 68414.m02389 expressed protein contains similarity to
anther-specific and pathogenesis response protein
(PrMC3) GI:5487873 from [Pinus radiata]
Length = 318
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Frame = +3
Query: 366 ENCLFLNVYTPS-----TDGAFLPVMIWIHGGGFKWGSGNTNLYGPDFLVD----RDVVV 518
E L L +Y P T +P++++ HGGGF + + +Y FL D +
Sbjct: 50 EKNLSLRIYLPQNSVYETGEKKIPLLVYFHGGGFIMETAFSPIY-HTFLTSAVSATDCIA 108
Query: 519 MTINYRCGALGFLSLNTPEVPGNAGIKDIVQAIRWVKDNIHHFG 650
+++ YR PE P +D AI+W+ +I G
Sbjct: 109 VSVEYR---------RAPEHPIPTLYEDSWDAIQWIFTHITRSG 143
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 6 KHLCNELNKILINNSGVNNEFPTMIS 83
K+LC + + L+NN+ VN FP+++S
Sbjct: 1244 KYLCLKDDNNLVNNAYVNGGFPSLVS 1269
>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
family protein contains Pfam profile PF01419:
Jacalin-like lectin domain
Length = 521
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 453 KWGSGNTNLYGPDFLVDRDVVVMTINYRC 539
+W S + N Y P + VD D V +T+ C
Sbjct: 290 EWSSLSVNYYPPSYFVDEDKVGLTLVICC 318
>At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprotein
family protein contains Pfam domain PF04127: DNA /
pantothenate metabolism flavoprotein
Length = 317
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 119 QDVRVASSHSGARAAPGTDRKQPVREG-LLQFPRNTICE 232
++++V SHSGA D++ V EG LL+ P +TI E
Sbjct: 123 KNIQVHGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYE 161
>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
fumarylacetoacetase (Fumarylacetoacetate hydrolase,
Beta-diketonase, FAA)[Rattus norvegicus]
SWISS-PROT:P25093
Length = 421
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 250 CDLRPHNLQNPGTASGMPRRKGTCVLKSIQSSRNPMS 360
C+LRP +L GT SG C+L+ + + P+S
Sbjct: 343 CNLRPGDLLGTGTISGPEPDSYGCLLELTWNGQKPLS 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,937
Number of Sequences: 28952
Number of extensions: 474348
Number of successful extensions: 1157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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