Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30667
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29450.1 68417.m04204 leucine-rich repeat protein kinase, put...    28   6.8  
At4g11970.1 68417.m01905 YT521-B-like family protein contains Pf...    27   9.0  

>At4g29450.1 68417.m04204 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 863

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 599 KNETKKLLQLFERGKVNWSSIKKTSNCLC*YQIKRTFSYKDKCCVLSKI--SLKPNILSP 426
           KNET+K+  L+    V+ +S + +S     +   R F+ KD    + K   S  P IL+ 
Sbjct: 295 KNETRKIKILWNGSPVSETSFEPSSKYSTTFSNPRAFTGKDHWISIQKTVDSTLPPILNA 354

Query: 425 LDIVSIKT 402
           ++I + ++
Sbjct: 355 IEIFTAQS 362


>At4g11970.1 68417.m01905 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 444

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  SIVFVVHNEYVVRALEAFVWDLYYSLFVFI 115
           S++F++HN Y+ + L  F  D+  + F F+
Sbjct: 386 SVLFLIHNTYISQCLAEFCIDVTGTSFCFL 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,437,611
Number of Sequences: 28952
Number of extensions: 219437
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)