Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30661
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44779| Best HMM Match : Cecropin (HMM E-Value=3.8)                  56   3e-08
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                36   0.050
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)                       29   4.3  
SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)                 29   5.7  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       29   5.7  
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   28   7.5  
SB_50746| Best HMM Match : Mid2 (HMM E-Value=0.55)                     28   10.0 
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_44779| Best HMM Match : Cecropin (HMM E-Value=3.8)
          Length = 56

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
 Frame = +3

Query: 417 DLKRDVAKKLERLERKTQRAIAELIWDRLKHGNE-DNLSAMITMTA 551
           DLKRDVAKKLE+LER+TQ AI E+I DRL+ G E ++L+A +   A
Sbjct: 4   DLKRDVAKKLEKLERRTQSAIVEIIRDRLQEGKEKEDLAAAVNAAA 49


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 499 LSQINSAMALCVFRSN-LSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSS 323
           L  + S + + V R N LS+F  T+R  SQS F  + +  S+S  TT   P S  +FT++
Sbjct: 21  LKTLRSPIKINVIRPNPLSTFTTTARPNSQSTFTTSDIPNSQSTFTTSERPNSQSTFTTT 80

Query: 322 S 320
           +
Sbjct: 81  A 81



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = -2

Query: 520 SSFPCFNLSQINSAMALCVFRSNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASN 341
           S+F   ++    S        ++ S+F  T+R  SQS F       +R ++ TF+  A  
Sbjct: 51  STFTTSDIPNSQSTFTTSERPNSQSTFTTTARPNSQSTFT----TTARPFQPTFTTTARP 106

Query: 340 KSFTSSSITVGSASLS 293
           KS ++S+ T    SLS
Sbjct: 107 KSQSTSTTTARPNSLS 122


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/80 (20%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = +3

Query: 255  SYKPQDEALQESK--LNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLK- 425
            +++P  EA  +++  L+ +EP   + +VK + ++GKE + +++  +T +       + K 
Sbjct: 1279 AFQPVREAFTQAEDLLSFSEPLDRKADVKQMNQSGKELMGVENQSVTGIKDEVDSANKKS 1338

Query: 426  RDVAKKLERLERKTQRAIAE 485
            +D+ ++L   +++ ++A+ +
Sbjct: 1339 KDIPRRLADRQKQLEKALKD 1358


>SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -2

Query: 499 LSQINSAMALCVFRSNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTS 326
           +S + S + +CV   N        RLR+Q+ +L A L +S    T F++PA+ + F +
Sbjct: 200 ISLVGSTLVVCVIYRN-------RRLRTQTNYLIANLAISDFVMTIFTMPATLEVFVT 250


>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
          Length = 256

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +3

Query: 306 EPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLER-LERKTQRAIA 482
           E  +  + + DLL+  ++   +   D+    PR+ + DL RD+ ++ ER L R+  R   
Sbjct: 16  ECDISRDRLGDLLDLNRDFEPILGRDLKRDLPRETERDLVRDLTRETERDLVRELSRETE 75

Query: 483 ELIWDRLKHGNEDNLSAMITMTANRPTITD 572
             +   L    E +L    T    R  + D
Sbjct: 76  RDLMRDLSRKTERDLVRDPTRETGRDLVRD 105


>SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +3

Query: 237 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKP-D 413
           PKPK R  K      +E ++  AEP    E+  + ++   E       D+    P  P +
Sbjct: 100 PKPKDRKTKEPKVETEEVEITTAEPVKPTEKPTEFVKPTTED------DVMETDPENPKE 153

Query: 414 WDLKRDVAKKLERLERKTQRAIAELI 491
            D++  V++K +RL+  T   IA ++
Sbjct: 154 GDMQARVSEK-KRLKVLTNEVIAAVV 178


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = -2

Query: 571 SVMVGRLAVIVIIALKLSSFPCFNLSQINSAMALCVFRSNLSSFLATSRLRSQSGFLGAK 392
           SV+V  L   V  A ++S FP   L  I  A+      + +S  L     +    F G  
Sbjct: 155 SVLVPGLIAGVSEATEMSKFPLAKL--IEPALYFAERGAKVSHALG----KMIKAFYGKT 208

Query: 391 LVMSRSWRTTFSLPASNKSF 332
           L  ++  RTTF+ PA+NK +
Sbjct: 209 LNKTKQGRTTFTNPATNKPY 228


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 321 EEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLERLERKTQRAIAELIWDR 500
           E+  K  L+ G  ++VLQD+      P + DW   +DV +    LE+   +A+ +L    
Sbjct: 197 EKLAKFQLQRGG-RIVLQDIK----RPERDDWGCGQDVIQAALDLEKHVNQALHDLHKVA 251

Query: 501 LKHGN 515
            KHG+
Sbjct: 252 EKHGD 256


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 577 SSSVMVGRLAVIVIIALKLSSFPCFNLSQINSAMALCV--FRSNLSSFLATSRLRSQSGF 404
           S S   G    +  I  +L    C    +  S    CV   R         +R+R +SG 
Sbjct: 667 SISCRSGEETCVTSIRCRLGEETCVTSIRCRSGEETCVTSIRCRSCEETCVTRIRCRSGE 726

Query: 403 LGAKLVMSRSWRTTFSLPASNKSFTSSS 320
           +      +RS   +FS+ ++ K  TSSS
Sbjct: 727 VARSTPATRSGFNSFSVDSAAKRKTSSS 754


>SB_50746| Best HMM Match : Mid2 (HMM E-Value=0.55)
          Length = 232

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 306 EPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLERLER 461
           +P V E+     ++ G E+ + Q LD+ +  P +   +   D   ++  LER
Sbjct: 2   QPDVAEQHTDSQVKPGAERTLGQSLDVPATQPSRQRANRTHDFTVRILELER 53


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 291 KLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLERLERKTQ 470
           K +  E    E+  K  L+ G  ++VLQD+      P + DW   +D  +    LE+   
Sbjct: 172 KASHEEREHAEKLAKFQLQRGG-RIVLQDIK----RPERDDWGCGQDAIQAALDLEKHVN 226

Query: 471 RAIAELIWDRLKHGN 515
           +A+ +L     KHG+
Sbjct: 227 QALLDLHKVAEKHGD 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,351,245
Number of Sequences: 59808
Number of extensions: 357752
Number of successful extensions: 1095
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)