Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30661
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05070.1 68416.m00550 expressed protein                             72   5e-13
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    31   1.2  
At3g20150.1 68416.m02554 kinesin motor family protein contains P...    28   6.2  

>At3g05070.1 68416.m00550 expressed protein
          Length = 144

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 38/90 (42%), Positives = 60/90 (66%)
 Frame = +3

Query: 237 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDW 416
           P  KFR+Y PQ + LQ+ KL   E    E+ +  L  A ++K   +D    ++AP+KP+W
Sbjct: 45  PAMKFRNYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKK---ED-PFVNIAPKKPNW 100

Query: 417 DLKRDVAKKLERLERKTQRAIAELIWDRLK 506
           DL+RDV KKL++LER+TQ+A+ +L+ ++ K
Sbjct: 101 DLRRDVQKKLDKLERRTQKAMHKLMEEQEK 130


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 237 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAG 353
           P+P+ R   P D  +  S  +D E T+ EEE + + EAG
Sbjct: 326 PRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIREAG 364


>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 420 LKRDVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSAMITMTANRPTITDDD 578
           L R V +   + E +T++ +     +RL   NE+ L + IT T +   I+DDD
Sbjct: 778 LTRLVGQHKLQTEDETEKLMGASNGERLPSANENQLLSCITETYDVKQISDDD 830


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,132
Number of Sequences: 28952
Number of extensions: 255425
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)