Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30657
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.59 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   5.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.6  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   9.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   9.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = -3

Query: 692 HAHVGAGAPVPQRGAA--HSAAEAPHVVAQRQGLDDH 588
           H H GA   VPQ G A           V  RQG+  H
Sbjct: 27  HQHYGAAVQVPQGGGAVQPDPGSCDPSVGLRQGIPPH 63


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 692 HAHVGAGAPVPQRGAAHSA 636
           H H GA   VPQ G   +A
Sbjct: 27  HQHYGAAVQVPQGGRRRAA 45


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 526 SASAGRGNVLTAERN*VAEPP*SSSP 603
           S  AG GN+    +  VA PP + SP
Sbjct: 98  SPGAGSGNLSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 526 SASAGRGNVLTAERN*VAEPP*SSSP 603
           S  AG GN+    +  VA PP + SP
Sbjct: 98  SPGAGSGNLSPQIQTQVARPPPARSP 123


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 420 YHQDVPNTLHNTAPLSN 470
           +HQ  P  LH+T P+ N
Sbjct: 98  HHQIRPPILHDTQPMCN 114


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 YHQDVPNTLHNTAPLSNS 473
           +HQ  P  LH+T P+  S
Sbjct: 98  HHQIRPPILHDTQPMCES 115


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 YHQDVPNTLHNTAPLSNS 473
           +HQ  P  LH+T P+  S
Sbjct: 98  HHQIRPPILHDTQPMCES 115


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 531 VSGKRKCSHCGEELGR 578
           + GK KC+  GEEL R
Sbjct: 47  ILGKGKCTPEGEELKR 62


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 323 FPGASLHPFTV 291
           FPG+  HPF +
Sbjct: 757 FPGSRFHPFLI 767


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 327 TVSWCEL 307
           TVSWCEL
Sbjct: 325 TVSWCEL 331


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 YHQDVPNTLHNTAPLSNS 473
           +HQ  P  LH+T P+  S
Sbjct: 98  HHQIRPPILHDTQPMCES 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,990
Number of Sequences: 336
Number of extensions: 3256
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)