Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30657
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 33 0.29
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 33 0.29
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 32 0.51
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 31 0.67
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 31 1.2
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) 30 2.1
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) 30 2.1
SB_34246| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 2.7
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 2.7
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 29 2.7
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 29 3.6
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 29 4.8
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4) 29 4.8
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 28 6.3
SB_46068| Best HMM Match : zf-CCHC (HMM E-Value=0.0034) 28 6.3
SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07) 28 6.3
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 6.3
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 28 6.3
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 28 8.3
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.9
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 540 KRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALG 662
+++C CG+ + GA+ + S + +H CFRC CG A+G
Sbjct: 399 QKECFACGQMIDSGASRLEYSGNF-WHENCFRCANCGEAIG 438
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 311 SHQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGA 490
+ +ET Q P T G P+ T +TA+ P +P +Q Q TE +P +
Sbjct: 1173 TQEETPQETPGDQSTEQGNPEVVETPPATAEEPQQGLPAPASQEDSQAQPTETKPEGAED 1232
Query: 491 GSETDAARGEASQRQREE 544
E GE S+ E
Sbjct: 1233 NPENAEKPGEVSKESEPE 1250
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTD 683
C+ CGE + A++ +L +H+WCF C C L G D
Sbjct: 89 CAGCGEAIKGSQALL--ALEKQWHLWCFSCTKCHCLLSLEYMGMD 131
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGR 671
KCS C + + +++ +L YH+ CF C +CG L G+
Sbjct: 6 KCSGCKKTIPANE-LVMRALGNVYHLHCFVCTMCGHILEKGQ 46
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGR 671
KCS C + + +++ +L YH+ CF C +CG L G+
Sbjct: 104 KCSGCKKTIPANE-LVMRALGNVYHLHCFVCTMCGHILEKGQ 144
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 356 GSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQ 535
GS TP+ + E+ P +V PG+ + A + E V G + +A+ G S+ +
Sbjct: 1121 GSITPEINQDLENNTMSPDGVVIPGKLESAAVKVSPEDGQEVVGEDAGPEASGGRTSRGR 1180
Query: 536 REEEMFS 556
R+ ++ S
Sbjct: 1181 RDSDVSS 1187
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
+KCS C + + +++ + YHV CF C C L G
Sbjct: 308 KKCSSCSQAIS-SKELVMRARDQVYHVNCFACDRCKRMLATG 348
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRA 674
CSHC + + +++ + + YH+ CF C C L G A
Sbjct: 81 CSHCNKPIA-AFELVMRARNNAYHIECFGCQRCRKRLVVGEA 121
>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 47 PTASSAAETEKPRIHRKRDHYEKQSSAVRRGVCECGTQRGTPEIQAASPARRCRSDQ 217
PTASSA E + H+ D Y ++ ++ CE G QR E+ A+ RC ++
Sbjct: 700 PTASSAREAVLRQCHKTMDTYLRRLTS-----CENGVQRS--ELGCAASEERCSKEE 749
>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
Length = 353
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 396 LRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSGKRKCS 554
L + +RH H TLH+ AP S+ H+ A T + + S R C+
Sbjct: 95 LNSMRRHHTHGRAKLTLHHVAP-SSEHKIQAPTASVTTEKSRTSEDSSNRNCT 146
>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
Length = 398
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 396 LRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSGKRKCS 554
L + +RH H TLH+ AP S+ H+ A T + + S R C+
Sbjct: 140 LNSMRRHHTHGRAKLTLHHVAP-SSEHKIQAPTASVTTEKSRTSEDSSNRNCT 191
>SB_34246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.9 bits (64), Expect = 2.1
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +3
Query: 228 HPMTRHTLQALSAAPTPKLMSNCEWMQARTRKPYNYNQH-WLIQ-EAEHRRIEEQRSRLR 401
H + LQ LS + ++ R + Y+ Q WL + ++R+ +EQ+++LR
Sbjct: 12 HVLVISDLQDLSTVEICSPLIILGTVRRREHRLYDIEQQTWLSSIQNDNRKDQEQKNKLR 71
Query: 402 TAQR-------HSYHQDVPNTLHNTA--PLSNSHQFLAQEVKRTPREEKLLSVSGKRKCS 554
T ++ Y DV N H A S+ LA E T R EK +RKC
Sbjct: 72 TLRKFKLSHNLEDYLTDVKNIDHRIALTKFRLSNHKLAIE---TGRYEKPYKKPNERKCL 128
Query: 555 HCGEE 569
C E
Sbjct: 129 VCQTE 133
>SB_41944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Frame = +3
Query: 339 QHWLIQ-EAEHRRIEEQRSRLRTAQR-------HSYHQDVPNTLHNTA--PLSNSHQFLA 488
Q WL + ++R+ +EQ+++LRT ++ Y DV N H A S+ LA
Sbjct: 311 QTWLSSIQNDNRKDQEQKNKLRTLRKFKLSHNLEDYLTDVKNIDHRIALTKFRLSNHKLA 370
Query: 489 QEVKRTPREEKLLSVSGKRKCSHCGEELGRGA--AMIIESLSLCY 617
E T R EK +RKC C E G +++ LSL +
Sbjct: 371 IE---TGRYEKPYKQPNERKCLVCQTETRPGVIPRLLLALLSLTH 412
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Frame = +2
Query: 41 EGPTASSAAETEKPRIHRKRDHYEKQSSAVRRGVCECGTQR-GTPEIQAASPARRCRSDQ 217
+G AS +T KP+ K +KQ+S R+ + T + + QAA P + R +
Sbjct: 278 QGGQASPKTKTSKPQDQDKPQDQDKQASRQRQASHKTKTSKPQDQDKQAARPRQASRKTK 337
Query: 218 RHLPSDD*T--HFTGFKRGSHAQAHVQL*MDASSHQETVQLQPALAHTGSGTPQDRRTKE 391
P D K H A ++ Q + L + +G P+ K
Sbjct: 338 TSKPQDQAARPRRASLKTSKAQDKHAARPRQARKARQARQARRKLQNKQAGRPRQDSCKT 397
Query: 392 STAD 403
D
Sbjct: 398 KLQD 401
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +2
Query: 368 PQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQR 532
P D R T S P QH PQH A Q GA RG A+ R
Sbjct: 460 PFDNRAPPPTQGYGPSGPSPWNMQHPPQHRAPPGQYPPLGASPPVQHGRGHATGR 514
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLS---LCYHVWCFRCGVCGAALGD 665
C CGE + G+ + S + C+H CF C C L D
Sbjct: 78 CKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVD 119
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KC+ C + ++ + + YH+ CFRC C L G
Sbjct: 83 KCAKCSLNFSKND-FVMRARNKIYHIDCFRCVACSRQLVPG 122
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 353 TGSGTPQDRRTKESTADCPASLVPPGRAQHAPQ---HGATEQQPSVSGAGSETD 505
TGSG P+ R T + PA++V R H Q H T+QQ S SG+ E +
Sbjct: 471 TGSGRPRSRATDQEEEKDPAAVV--SRVTHQLQRLAHSKTKQQDS-SGSLKERE 521
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 47 PTASSAAETEKPRIHRKRDHYEKQSSAVRRGVCECGTQRGTPEIQAASPARRCRSDQ 217
PTASSA + + H+ D Y ++ ++ CE G QR E+ A+ RC ++
Sbjct: 269 PTASSARKAVLRQCHKTMDTYLRRLTS-----CENGVQRS--ELGCAASEERCSKEE 318
>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 368 PQDRRTKESTADCPASLVPPGRAQHAPQHGATE 466
P+ RT +S D P LV P R+ H P+H E
Sbjct: 1121 PERLRTSDSGEDSPDRLV-PDRSNHRPEHAFFE 1152
>SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4)
Length = 176
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 452 HGATEQQPSVSGAGSETDAARGEASQRQREEEM--FSLRRGTRSRSRH 589
+GA + + G+GSE+D G +++ +++ L +SRSRH
Sbjct: 128 NGAEDDEDHEDGSGSESDGQGGRRPKKRSRKKIPHHKLNWNAKSRSRH 175
>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
Length = 1803
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 300 WMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVP-NTLHNTAPLSNSH 476
W++ R +P H + +E E RIE RSR T+ + ++ +P N + P +
Sbjct: 774 WLEGRFYEPELQPVH-IDEEEELYRIERLRSRTMTSSQEPFYVTLPSNAIEGALPGNTIS 832
Query: 477 QFLAQEVK 500
F + K
Sbjct: 833 DFTIRTPK 840
>SB_46068| Best HMM Match : zf-CCHC (HMM E-Value=0.0034)
Length = 193
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 280 SSCPTVNGCKLAPGNRTTTTSTGSYRKRNTAG*KNKG 390
SSCP + C PG T SY N G + KG
Sbjct: 114 SSCPDLPACTKCPGRHLTLLHMDSY-NNNNQGDRKKG 149
>SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)
Length = 166
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 389 PLFFYPAVFRFLYEPVLVVVVRFPGASLHPF 297
P+F FR ++PV V++ PG L PF
Sbjct: 8 PIFVRRTTFRLPFKPVTPVIMIGPGTGLAPF 38
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 303 MQARTRKPYNYNQHWLI--QEAEHRRIEEQRSRLRTAQRHSYHQDV 434
MQ R R+ Y + + QEAE +R++E+R + +R QD+
Sbjct: 533 MQERERREYEKIKKQKVENQEAEQKRLDEERRQREIQRRRQELQDI 578
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KC+ CG + + + + YH+ CF C C L G
Sbjct: 162 KCARCGRSI-HANDWVRRAKNCVYHLACFACDNCKRQLSTG 201
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/86 (24%), Positives = 34/86 (39%)
Frame = +2
Query: 308 SSHQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSG 487
+SH E + L P L +R ST++ + +VP + P+ G +P
Sbjct: 638 TSHMEDMDLDPLLKSPPPIVTPKQRHHSSTSNATSPIVPSPASSDHPKPG----RPRNRR 693
Query: 488 AGSETDAARGEASQRQREEEMFSLRR 565
S E R++EEE L +
Sbjct: 694 QSSRKQQEEKERLLREQEEERLRLEQ 719
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 24.6 bits (51), Expect(2) = 9.9
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWC 629
C CG+ ++ +S + YH +C
Sbjct: 803 CEGCGKGSDEARLLLCDSCDISYHTYC 829
Score = 21.0 bits (42), Expect(2) = 9.9
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = +3
Query: 624 WCFRCGVCGA 653
WC C CGA
Sbjct: 846 WCVSCDDCGA 855
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,002,578
Number of Sequences: 59808
Number of extensions: 459617
Number of successful extensions: 1971
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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