Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30657
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.10
At2g01690.2 68415.m00097 expressed protein 31 0.55
At2g01690.1 68415.m00096 expressed protein 31 0.55
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 31 0.73
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 31 0.96
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 31 0.96
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 31 0.96
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 30 1.3
At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 29 2.2
At5g35604.1 68418.m04242 hypothetical protein 29 2.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.9
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 29 2.9
At1g07870.1 68414.m00854 protein kinase family protein contains ... 29 2.9
At2g18420.1 68415.m02145 gibberellin-responsive protein, putativ... 29 3.9
At1g17380.1 68414.m02120 expressed protein 29 3.9
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 28 5.1
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 28 5.1
At1g67230.1 68414.m07652 expressed protein 28 5.1
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual... 28 5.1
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 28 5.1
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 28 6.8
At4g27120.2 68417.m03898 expressed protein 27 9.0
At4g27120.1 68417.m03897 expressed protein 27 9.0
At4g25580.1 68417.m03686 stress-responsive protein-related conta... 27 9.0
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 27 9.0
At1g05640.1 68414.m00585 ankyrin repeat family protein contains ... 27 9.0
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Frame = +2
Query: 251 TGFKRGSHAQAHVQL*MDASSHQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPG 430
+GF G A + D + L H S P+ ++ ++T + P P G
Sbjct: 697 SGFVPGKQQNADLSRYHDTETPVPAGFQPEQLTHLASSLPRQQQQVQNTPNQPERYAPEG 756
Query: 431 RAQHAP-QHGATEQQPSVSGAGSETDAARGEASQRQREEE 547
RA + QH T P + ++ + SQ+Q E E
Sbjct: 757 RASFSHLQHAQTPSIPQLVTPQNQNVQIQSSNSQQQEETE 796
>At2g01690.2 68415.m00097 expressed protein
Length = 744
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +3
Query: 306 QARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFL 485
QARTR Y+Y+ E RR EEQ+ + + Q+ Q P ++ ++++++
Sbjct: 672 QARTRVNYSYHSSSSSTSKEVRRSEEQQQQQQQQQQQQQQQQRPPPSSTSSSVADNNRPP 731
Query: 486 AQEVKRTPREEKL 524
++ ++ P + +L
Sbjct: 732 SRTSRKGPGQLQL 744
>At2g01690.1 68415.m00096 expressed protein
Length = 743
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +3
Query: 306 QARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFL 485
QARTR Y+Y+ E RR EEQ+ + + Q+ Q P ++ ++++++
Sbjct: 671 QARTRVNYSYHSSSSSTSKEVRRSEEQQQQQQQQQQQQQQQQRPPPSSTSSSVADNNRPP 730
Query: 486 AQEVKRTPREEKL 524
++ ++ P + +L
Sbjct: 731 SRTSRKGPGQLQL 743
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 540 KRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTD 683
+R C C ++G G + + +H CFRC CG A+ + T+
Sbjct: 159 QRICGGCNSDIGSGN--YLGCMGTFFHPECFRCHSCGYAITEHEIPTN 204
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 317 QETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGS 496
Q++ QLQ A H G+ T Q + S + PP Q + Q +Q P ++G
Sbjct: 665 QQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQ-VEQQQPPGLNGQNQ 723
Query: 497 ETDAARGEASQRQREE 544
+T + +A Q Q ++
Sbjct: 724 QT-LLQQKAHQAQAQQ 738
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 317 QETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGS 496
Q++ QLQ A H G+ T Q + S + PP Q + Q +Q P ++G
Sbjct: 664 QQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQ-VEQQQPPGLNGQNQ 722
Query: 497 ETDAARGEASQRQREE 544
+T + +A Q Q ++
Sbjct: 723 QT-LLQQKAHQAQAQQ 737
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 317 QETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGS 496
Q++ QLQ A H G+ T Q + S + PP Q + Q +Q P ++G
Sbjct: 665 QQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQ-VEQQQPPGLNGQNQ 723
Query: 497 ETDAARGEASQRQREE 544
+T + +A Q Q ++
Sbjct: 724 QT-LLQQKAHQAQAQQ 738
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 462 LSNSHQFLAQEVKRTPREEKLLSVSGKRKCSHCG 563
+S +HQ A E R ++E +L +R+CSHCG
Sbjct: 155 VSTNHQHAATEQLRKKKQETVLVF--QRRCSHCG 186
>At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 418
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 516 EKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCG 641
E + G +KCS C + G + C H +C+ CG
Sbjct: 360 ESFVKTQGWKKCSQCQSIVQHGGGCQQMTCRHCKHEFCYTCG 401
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 482 SGAGSETDAARGEASQRQREEEMFSLRRGTRSRSR 586
S AGS + R E R++E ++R TRSRSR
Sbjct: 626 SRAGSRSPRRRKEVKSTPRDDEENKVKRRTRSRSR 660
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 338 PALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETD 505
P G+ +P+ + + T DC L PP R P AT PS +G +TD
Sbjct: 71 PRRPSRGNSSPRRDKARART-DCSPRLSPPSRTMGPPPPVAT--SPSSQWSGEKTD 123
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 410 ASLVPPG-RAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQREEEMFS 556
A++ PP +A PQ+ A QP +SG G T + +QR + F+
Sbjct: 983 AAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQFA 1032
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 492 EVKRTPREEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
E+ RTP + + KC+ C + + + +ES CYH CF+C G +
Sbjct: 90 ELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVESQ--CYHKSCFKCSHGGCPI 143
>At1g07870.1 68414.m00854 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 423
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 47 PTASSAAETEKPRIHRKRDHYEKQSSAVRRGVCE 148
P + S++ + P HR RD EK+ V+ CE
Sbjct: 387 PNSPSSSSGKNPSFHRDRDDEEKRPHLVKETECE 420
>At2g18420.1 68415.m02145 gibberellin-responsive protein, putative
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 88
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 592 SSSPCLCATTCGASAAECAAPRWGTGAPAPTCAC 693
SS P LC CG A C GT C C
Sbjct: 31 SSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPC 64
>At1g17380.1 68414.m02120 expressed protein
Length = 274
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 380 RTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQ 529
R +S+ P PPG+ + G ++ +PS S G D A SQ
Sbjct: 44 RKPDSSLALPGKFDPPGKQNAMHKAGHSKGEPSTSSGGKVKDVADLSESQ 93
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 504 TPREEKLLSVSGKRKCSHCGE-----ELGRGAAMIIESLSLCYHVWCFRCGV 644
T + K+ +++ +++ CG+ EL +G + C H +C+RCGV
Sbjct: 246 TENDGKIKALANQKRWRQCGKCQHMIELSKGCVQV---KCRCGHKFCYRCGV 294
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +3
Query: 444 LHNTAPLSNSHQFLAQEVKRTPREEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHV 623
L T+ QF E K P E + + S C CGE+ + + YHV
Sbjct: 208 LSRTSYKEQLKQFYTGESKPCPNAENIRNDSVSDICKLCGEKAEARDCLACDHCEDMYHV 267
Query: 624 WCFRCG 641
C + G
Sbjct: 268 SCAQPG 273
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = +3
Query: 363 EHRRIEEQRSRLRTAQRHSYHQ------DVPNTLHNTAPLSNSHQFLAQEVKRTPREEKL 524
E +RIE+++ + +++ H Q DV + + T L + E R L
Sbjct: 668 ERQRIEKEKLEVDSSKNHLEEQQTEIRKDVDDLVALTKKLKEQREQFISE-----RSRFL 722
Query: 525 LSVSGKRKCSHCGEELGRGAAMIIESLSL 611
S+ R CS CGE L I++L +
Sbjct: 723 SSMESNRNCSRCGELLSELVLPEIDNLEM 751
>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
specificity kinase 1 (ADK1) [Arabidopsis thaliana]
gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
and gi:1216483. Note: differences between cDNAs in the
11th exon, possibly due to errors or alternative
splicing.
Length = 471
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 350 HTGSGTPQDRRTKESTADCPASLVPPG---RAQHAPQHGATEQQ--PSVSGAGSETDAAR 514
H + T +DR ++ D P S PPG R + + ++G++ ++ PS S S +
Sbjct: 351 HPATSTTRDRSASRNSVDGPLSKHPPGDSERPRSSSRYGSSSRRAIPSSSRPSSAGGPSD 410
Query: 515 GEASQR 532
+S R
Sbjct: 411 SRSSSR 416
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 492 EVKRTPREEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
E+ RTP + + + KC+ C + + + +E C+H CFRC G L
Sbjct: 85 ELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQMEGE--CFHKTCFRCAHGGCTL 138
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +3
Query: 258 LSAAPTPKLMSNCE---W-MQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYH 425
L+A P + E W M A+ Y Q I+ E RR E++ S +R R
Sbjct: 456 LAATPLKSASNRAEAQIWNMDAQNALSYPSVQEEEIERTETRRNEDE-SIVRLESRVKDQ 514
Query: 426 QDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSV 533
D + + L + QE++ +P EE+ L V
Sbjct: 515 LDTTSVTSSVYDLPENILMTDQEIRSSPPEERELDV 550
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 371 QDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQREEE 547
+D R++E A+ P + P A ++P+ SGA S T + S + E+E
Sbjct: 27 RDARSREEVAE-PPQVQPRENVARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDE 84
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 371 QDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQREEE 547
+D R++E A+ P + P A ++P+ SGA S T + S + E+E
Sbjct: 27 RDARSREEVAE-PPQVQPRENVARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDE 84
>At4g25580.1 68417.m03686 stress-responsive protein-related contains
weak similarity to Low-temperature-induced 65 kDa
protein (Desiccation-responsive protein 29B)
(Swiss-Prot:Q04980) [Arabidopsis thaliana]
Length = 626
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/68 (26%), Positives = 26/68 (38%)
Frame = +2
Query: 344 LAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEA 523
L TG+GT Q + S + + PG A TE+ G G RG
Sbjct: 462 LPFTGTGTEQGQDRGVSAKEFLTEKLSPGEEDKALSEVVTEKLHLGGGGGETAPPKRGIV 521
Query: 524 SQRQREEE 547
+Q + E+
Sbjct: 522 TQSEEVEK 529
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +3
Query: 345 WLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKL 524
+ I E E +I E S L+++ H+ +++ T + Q VK+ ++ +L
Sbjct: 350 YTISEEEREQIREAGSLLKSSVNHA------SSIRQTTVNKDLPQLRKSPVKKGEKKVEL 403
Query: 525 LSVSG-KRKCSHCGEELGRGAAMIIESLSLCYHVWCFRC 638
+ K C C E + +L C H +CF C
Sbjct: 404 VKRDVIKNVCGICLSE--EDMRRLKGTLDCCSHYFCFTC 440
>At1g05640.1 68414.m00585 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 627
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 410 ASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQ 535
+SLVP Q + + + E+Q S+ G+E +G A +Q
Sbjct: 2 SSLVPVMEKQESVRGNSVEEQQSLRCVGAENQVRKGRALDKQ 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,258
Number of Sequences: 28952
Number of extensions: 299364
Number of successful extensions: 1192
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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