Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)                 79   3e-15
SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)                     32   0.47 
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_26630| Best HMM Match : ig (HMM E-Value=0.0021)                     31   0.81 
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        31   1.4  
SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)                     31   1.4  
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_2946| Best HMM Match : ig (HMM E-Value=6.1e-05)                     31   1.4  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          30   2.5  
SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)           29   3.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   29   5.7  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         29   5.7  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                29   5.7  
SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)                      28   7.6  
SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)
          Length = 250

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 1/165 (0%)
 Frame = +3

Query: 177 LKDSCQNNATFF-KPDDTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPG 353
           LK    +NA +F K       +R ++ F  + D I ++  L  ++ +    +DF  +  G
Sbjct: 31  LKRIVADNAEYFSKYAHKAVYKRFHESFKQILDSIGSMEELSTYLAQRVTLFDFSPEIKG 90

Query: 354 NGYRSFVSVVDSCVLYSLKLSRQVGTGREALLFRKSHFVKEIESCGQLLASLGTCLHHLQ 533
           NGYRS + + +  +    ++S    T RE   FR  H+  E+E+   L   +   L + +
Sbjct: 91  NGYRSLLRITEHGIRVVTEISYYCLTHREKFYFRTHHYCLEVEAYTSLFLRVRDLLQYSK 150

Query: 534 TLLGWAPPGELFPTEHHTPEELFSQADTINQYCFYGRCLGFQFIP 668
           T +  +  G+LFPT      ++  +A+ +++ CFYGR LGFQ  P
Sbjct: 151 TCMAESKLGDLFPTS--IDSQVMIEAEQMDRECFYGRTLGFQHFP 193


>SB_33854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 536 FTWLGTPGGTVSHRTSYT 589
           FTW+G  G TV+HR SYT
Sbjct: 275 FTWIGPQGHTVAHRPSYT 292


>SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)
          Length = 933

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
 Frame = +3

Query: 276 IETVWPLVDHVRKVAPQYDFDTKSPGNGYRSFVSVVDSCVLYSLKLSRQVGTGREALLF- 452
           +E   PL + ++ +  +Y F   + G    + ++ + + +  SL  S   G G + L F 
Sbjct: 548 LENRKPLRERIKAIFKKYGFTVTAIGLAVATTIAAIVTSLGKSLS-SVARGVGEQTLYFE 606

Query: 453 ---RKSHFVKEIESCGQLLASLGTCLHHLQTLLGWAPPGELFPTEHHTPEELFSQADTIN 623
              R+  FV  +  C    +       H  T +   PP    P  HHT E +    +TIN
Sbjct: 607 RPIRRLRFVA-LRQCSLFNSWYNLEREHQITTIAALPPIATLPAGHHTAESI---VETIN 662

Query: 624 Q 626
           +
Sbjct: 663 R 663


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 15  GLLHTMRLKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDSCQ 194
           G LHT+     T  V   +  L I  +SD P      C +SN G+   F  + + K++  
Sbjct: 464 GRLHTL---ITTEHVSIFTQALNIPRYSDTPKGDKVFCTDSNVGL-ENFLGWSSAKETED 519

Query: 195 NNATFFKPDDTENG-QRLYQGFMT 263
           +N T      + NG Q+L    +T
Sbjct: 520 DNGTDDGAQKSTNGYQKLVDFLLT 543


>SB_26630| Best HMM Match : ig (HMM E-Value=0.0021)
          Length = 333

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+ + G TV+H  SYT
Sbjct: 156 TPPPTFTWISSQGHTVAHGPSYT 178


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 519 LH-HLQTLLGWAPPGELFPTEHHTPEELFSQADTINQYCFYGRCLGFQFIPSMRGILK 689
           LH HL  L  ++   +LFP   +   E+++Q D +     Y R  G + +P + G  K
Sbjct: 87  LHFHLSDLCRFSVESKLFPDLRNNESEIYTQ-DDVRNLVAYARDRGIRVMPEVEGAAK 143


>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
          Length = 332

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G TV+H  SYT
Sbjct: 82  TPPPTFTWISPQGHTVAHGPSYT 104


>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G TV+H  SYT
Sbjct: 39  TPPPTFTWISPQGHTVAHGPSYT 61


>SB_2946| Best HMM Match : ig (HMM E-Value=6.1e-05)
          Length = 200

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G TV+H  SYT
Sbjct: 58  TPPPTFTWISPQGRTVAHGPSYT 80


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G TV+H  SYT
Sbjct: 30  TPPPTFTWIRPQGHTVAHGPSYT 52



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G  V+H  SYT
Sbjct: 379 TPPPTFTWISPQGHIVAHGPSYT 401


>SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)
          Length = 480

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 208 NVALF*QESFSASYIAKVGGIPSLLSA-QQYEALAGGSENSIILSVLEANRTPRVMNLSL 32
           +  LF +E  +     KVG +  +L A  Q  A         +L+ L  + T +++ L+ 
Sbjct: 51  STVLFCEELVAVVGEYKVGPVAGVLRAFLQQTANCTNHVTGPVLACLPTHLTQKLLQLAP 110

Query: 31  IVCNSPDFL 5
           +VC+SPD +
Sbjct: 111 VVCSSPDVI 119


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
 Frame = +3

Query: 321  PQYDFDTKSPGNGYRSFVSVVDSCVLYSLKLSRQVGTGREALLFRKSHFVKEIESCGQLL 500
            P Y+F  +S  N    F   V   +L     S   G G+  L+F     ++ I S G + 
Sbjct: 4135 PTYEFANESLRNESERFCKEV---LLTGPVFSSCAGLGQGVLMFYYRSCIQRIASTGAIC 4191

Query: 501  ASLG---TCLHHLQTLLGWA--PPGELFPTEHHTPEELFSQADTINQYCFYG 641
            ASL    T   + Q++LG A  P   L      T   ++   + + Q CFYG
Sbjct: 4192 ASLEVVVTLSDYCQSVLGLATWPAQPLCNAFPGTEFPIWYGPECLRQ-CFYG 4242


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 DGIPPTFAMYEALKDSCQNNATFFK 215
           + +PPT   +E+  +SCQ N T FK
Sbjct: 783 NSMPPTNTSFESFVESCQVNMTHFK 807


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 639 GRCLGFQFI-PSMRGILKGISICMAGFSEAYYCHGNVISSVWTGG 770
           GR   FQF  P  R  L  I +   G+ +A   H N  SSVW GG
Sbjct: 620 GRRYVFQFTSPDER--LTSIDVRAGGWVDAIRLHTNFKSSVWMGG 662


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 477  IESCGQLLASLGTCLHHLQTLLGWAPPGELFPTEHHTPEELFSQA 611
            +E   QLL      L HL  L+   PP    P     P  L S A
Sbjct: 1647 MEEAMQLLIDTSEALQHLSLLMDCCPPEAFTPDSSPVPANLLSNA 1691


>SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)
          Length = 206

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYT 589
           T P  FTW+   G  V+H  SYT
Sbjct: 30  TPPPTFTWISPQGHIVAHGPSYT 52


>SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 118 EALAGGSENSIILSVLEANRTPRVMNLSLIVCNSPDF 8
           +ALA  S   + L +L  + T RV+ LS  +CN+  F
Sbjct: 357 KALASRSPIPLFLPILATSHTGRVVTLSSRMCNTQSF 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,575,710
Number of Sequences: 59808
Number of extensions: 640470
Number of successful extensions: 1678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)