Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01270.1 68416.m00033 pectate lyase family protein similar to...    32   0.50 
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    29   3.6  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    28   6.2  

>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 521 TSPSDFTWLGTPGGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHIH 700
           TSP D   +    GT+ H         +  +H+ S+ L +++   S  TIDAR    HI 
Sbjct: 167 TSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHI- 225

Query: 701 MYG 709
            YG
Sbjct: 226 AYG 228


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 451 NRSASRPV-PTCRLSLRLYNTHESTTETKLRYPFPGDFVSKSYCGATFRTWSTR 293
           N S+ + + P  R S  L   H     +    P PGDFV  S    T R WST+
Sbjct: 396 NDSSDQSIGPNGRRSYTLLLGHSGPVYSATFSP-PGDFVLSSSADTTIRLWSTK 448


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 585 TPEELFSQADTINQYCFYGRCLGFQFIPSMRGI 683
           TP+++F   D +N++  Y RC G      M G+
Sbjct: 276 TPDQVFDARDLVNRHHGYKRCKGANAADFMMGV 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,106,537
Number of Sequences: 28952
Number of extensions: 434716
Number of successful extensions: 1134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)