Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30655
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8) 36 0.028
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6) 36 0.028
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.45
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.45
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 7.3
SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/36 (69%), Positives = 27/36 (75%)
Frame = +2
Query: 50 KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 157
++ A WLILPVVICLSQRLSHACLS S RMA
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/36 (69%), Positives = 27/36 (75%)
Frame = +2
Query: 50 KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 157
++ A WLILPVVICLSQRLSHACLS S RMA
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 495 DVVAVSQAPSPESNPDSPLPVTTM 424
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 486 AVSQAPSPESNPDSPLPVTTM 424
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
Length = 171
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 50 KKRAPWLILPVVICLSQRLS 109
++ A WLILPVVICLSQRLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166
>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
Length = 147
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 50 KKRAPWLILPVVICLSQRLS 109
++ A WLILPVVICLSQRLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -1
Query: 485 PFLRLPLRNRTLIPRYP 435
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 84 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 218
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 84 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 218
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 635 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 510
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 504 PSLDVVAVSQAPSPESNPDSPLP 436
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 447 NQGSIPEREPEKRLPHPRKAAGAQIT-HSRHG-EVVTKNNDTGLLRGLVIGMSTL 605
N+ +IP+RE E R AAGA I H +H K+ G R L +G L
Sbjct: 10 NEKTIPQREVE-RTKKAATAAGASIAEHIKHAIAEQVKHAKPGFSRSLTLGQKLL 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,873
Number of Sequences: 59808
Number of extensions: 433299
Number of successful extensions: 1155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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