Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30648
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At1g76320.1 68414.m08866 far-red impaired responsive protein, pu...    29   2.9  
At1g19930.1 68414.m02498 kelch repeat-containing F-box family pr...    29   2.9  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    29   3.8  
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    29   3.8  
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar...    28   5.0  
At1g43720.1 68414.m05023 hypothetical protein                          28   5.0  
At5g08270.1 68418.m00974 expressed protein                             28   6.7  
At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    28   6.7  
At3g16110.1 68416.m02035 thioredoxin family protein similar to p...    28   6.7  
At5g07380.1 68418.m00845 hypothetical protein                          27   8.8  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   8.8  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    27   8.8  

>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 VSEVENSLGRVSKWG-ESNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQ 525
           + E     G +S+ G E     +N +   VC    KKDPF + P+ + V L+
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLE 312


>At1g76320.1 68414.m08866 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 732

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 579 SESFGRQSQVGVQNAGSPQQSEAVL 653
           SE+ G  SQ G Q+   P+QS+AVL
Sbjct: 673 SETVGEGSQEGFQHVADPRQSQAVL 697


>At1g19930.1 68414.m02498 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 344

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/88 (25%), Positives = 44/88 (50%)
 Frame = -3

Query: 305 PVLSSA*QCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTVMLRPSKS*R 126
           P+LS   +   S+ ++  +Y+ +S+   TE C    L+   +++ PS   +  RP  +  
Sbjct: 32  PILSLVSKRFSSVLTLPELYQTRSLVGLTENCLYVCLLSSRADRIPSWFKLCRRPILA-- 89

Query: 125 STCRDPRGFRKMVTSIEVPYARPCRRPS 42
           S  R   G+  ++ +I +P++ P  R S
Sbjct: 90  SDTRKSSGY--VLATIPIPHSPPLHRSS 115


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +1

Query: 409 KWGESNLVQFNPLKTQ----VCAFTAKKDPFVMAP 501
           KW E  L QF P KT     VCA T    PF M P
Sbjct: 544 KWHEHTLAQF-PRKTSLTCNVCALTHSSCPFYMCP 577


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 327 MADISRIP-RAIICIAMHAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 181
           +A+   IP R +  IAM+A  +Q V  + +E +G +   +W   ++  GI
Sbjct: 158 IAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207


>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
           to  M protein, serotype 5 precursor (SP:P02977)
           {Streptococcus pyogenes} and to Myosin heavy chain,
           non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
           {Drosophila melanogaster}
          Length = 537

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 540 DTLGRLQGYSLELRRHDKGVLLRSERANLCLQRVEL 433
           +  G ++G   E R H KG++ + E A LC Q+ EL
Sbjct: 135 EVAGDIEGKRNEDREHLKGLMTKLEAALLCNQKREL 170


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 278 CIAMQMIARGMRDISAIRVSLGAWCKRDDQNLCLKWRTLW 397
           C  + +I +G   ++A R  L  W KR+D N C  W   W
Sbjct: 268 CSTVGIITKGST-MAANRKILTRWFKRNDSNKCSIWIFSW 306


>At5g08270.1 68418.m00974 expressed protein
          Length = 386

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 258 VIDIQDEKRGGEHRTLWNASVNGHGIRTVTVYNDRDAPPIQKLAIHLQRP 109
           VI+ Q   RGG  R +WN S     IRT     +  +  + K+   L RP
Sbjct: 217 VINAQPWGRGGISREVWNGSFTTPEIRTEATTTENSSDKVWKM---LSRP 263


>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
 Frame = +1

Query: 253 NDMLSIDGMHCYADDSTGDARYIG---HQSLSRSVVQ---ERRSKLVSEVENSLGRVSKW 414
           ND  S D +  Y D +  ++   G   H   S ++V    E+ S+    +     +VS W
Sbjct: 47  NDTKS-DHLSLYLDVAESESLPCGWRRHAQFSFTIVNHIPEKCSQRKETIHWFCEKVSDW 105

Query: 415 GESNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISS--DVQFRSH 588
           G +NLV    LK +   F  K +  ++      V ++  E IG+L V  S   DV     
Sbjct: 106 GFTNLVPLIELKAEDSGFLVKGELKIV------VEIEVLEVIGLLNVSESESMDVNGFHV 159

Query: 589 LEGKAKLASKMLGV 630
           L  +AK    +  +
Sbjct: 160 LPSQAKYVKSLFEI 173


>At3g16110.1 68416.m02035 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 534

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 388 NSLGRVSKWGESNLVQF--NPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDI 561
           N    V+K  ESN V+   +P+K QV  F+   D   +A   + ++ +    + ++ +DI
Sbjct: 285 NKFPLVTKLTESNTVRVYSSPVKLQVMVFSKTDDFESLAQPLEDIARKFKSKLMLIYIDI 344

Query: 562 SSD 570
           S++
Sbjct: 345 SNE 347


>At5g07380.1 68418.m00845 hypothetical protein 
          Length = 595

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 415 GESNLVQFNPLKTQVCAFTAKKD--PFVMAPQFQGVSLQ 525
           G  N+V  NP+   VC F+ KK   PF    +  G  L+
Sbjct: 555 GSPNVVIHNPISPDVCVFSQKKPLIPFQTTQRIIGKDLE 593


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 409 KWGESNLVQF---NPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESI 540
           KW E  L  F    PL   VCA T  + PF + P    V+ Q   S+
Sbjct: 275 KWHEHTLSLFPRKTPLTCSVCALTHTRCPFYICPPCDFVAHQSCFSL 321


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 369 F*SSLLHHAPRETLMADISRIPRAII 292
           F S+ LHH PR  L+   SR+ R +I
Sbjct: 2   FSSTTLHHLPRPNLLLPSSRVCRKVI 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,725
Number of Sequences: 28952
Number of extensions: 390464
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)