Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30639
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           28   8.9  

>SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 346 YCIFNICVH-IFNDCKTTVRIKNNYKLVQSVYKALTIVYKNSICKM 212
           + + N+C H + N C  T+ I  N+ L       LTI+YK+ +  M
Sbjct: 76  HTLTNMCNHTLTNMCNHTLTIMYNHTLTNMYNHTLTIMYKHILTTM 121


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +3

Query: 177 KMNYMKIYIFTCILQMLFL*TIVSALYTDC---TSL*LF-----FILTVVLQSLKMC 323
           +++Y  +Y+F C+L      T+ +  + DC    SL  F     + L + LQ L +C
Sbjct: 73  RLSYQSLYLFVCLLWAAIRTTLFAFYFNDCDTANSLTAFPSWFLYALPIYLQFLMLC 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,339
Number of Sequences: 59808
Number of extensions: 347453
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)