Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30638
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049
SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06) 35 0.065
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40) 31 1.4
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 29 3.2
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18) 29 4.2
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0) 28 7.4
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +2
Query: 245 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 424
++D GKRY+D V+ GHCHP++ AL+DQ +L T+ + + + E+ ++
Sbjct: 1 MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVT 59
Query: 425 KLPGDLNVVYLVNSGSEANELATLLAKAY 511
KL G + V VNSG E E A LA+ +
Sbjct: 60 KLCG-YDKVLPVNSGVEGGETACKLARKW 87
>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 51.2 bits (117), Expect = 9e-07
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 89 STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 253
ST +MPP D+ P PY G S+ + +Q++ Y+ P++ YK P+ + +W+ D
Sbjct: 31 STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85
>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 35.5 bits (78), Expect = 0.049
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 242 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 352
++ D D KRY+D G + +GH HP+V A+++QL
Sbjct: 43 YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79
>SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06)
Length = 563
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 455 LVNSGSEANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYH 634
LVNS +E + L ++ +GN D ++ S T S++G++ T + Y+
Sbjct: 290 LVNSKTEKGSILHLNTRSLSGNFDKVTNLLSTLNLTFSMIGISETWLKNVCHSCDIPGYN 349
Query: 635 AVHPDPFRXAFGGCRGLYL 691
VH +P + GG GLYL
Sbjct: 350 YVH-EPRKGRTGGGVGLYL 367
>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
Length = 644
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = +2
Query: 416 LAAKLPGDLNVVYLVNSGSEANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQS 595
+A LPG + + E+ + G +++ L+T++ L+G + S
Sbjct: 1 MADGLPGFPGETAVGRAAVESKSACAFVPTLSRGMVEVAVLETTHR---QGLVGRSHVHS 57
Query: 596 YRMAIPVPPGFYHAVHPDPFRXAFGGCRGLYLASS 700
++ + PG + A+ P P + A+ GL L S
Sbjct: 58 RQLMVSGLPGLHGALVPRPVQVAYNNKHGLVLTPS 92
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 39 KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 155
KWL ++N A SS T K + S PD T+ NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754
>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
Length = 550
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 461 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 357
SL+IPR PPG R++ H F+D Y +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452
>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 242 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 346
++ D DG LD++ I ++ +G+ HP + A++D
Sbjct: 157 YVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 21 QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 191
++ L+EEQ S S T R C S +RT D N+ KE C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 215 VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 325
VLLT G Q L KR D IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104
>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 467
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 284 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 460
GGIVT + G CH N+ + + D L + + H K+ + Q + G++ +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 133 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 312
HG + PT T+ L+A+ + AG+ HP HAV + +P + W LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551
Query: 313 LS 318
++
Sbjct: 552 VA 553
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,432,283
Number of Sequences: 59808
Number of extensions: 608801
Number of successful extensions: 1623
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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