Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30636
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                       157   6e-39
SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   7e-39
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   5.7  

>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score =  157 bits (382), Expect = 6e-39
 Identities = 78/148 (52%), Positives = 107/148 (72%)
 Frame = +3

Query: 63   SIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVVLV 242
            ++ L   TMS  P V I R ETFS++HRLH+P L++++N++++G+CNN NGHGHNY V V
Sbjct: 877  AVYLAAVTMSR-PFVYITRTETFSASHRLHNPTLTNQKNQELFGRCNNKNGHGHNYKVSV 935

Query: 243  TVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQ 422
            TV   VD  TGMV+N+  LK  I+  +L  LDHKNLD DV YFKT+ ST ENVAIY++DQ
Sbjct: 936  TVASTVDGTTGMVINLVTLKGKIE-EVLGKLDHKNLDMDVAYFKTVVSTAENVAIYIYDQ 994

Query: 423  LQRIMEKPQLLHEVKILETEKNHVVYRG 506
            L+ ++     L+EV ++E+E +  VYRG
Sbjct: 995  LKPLLPDGS-LYEVGLIESETDAAVYRG 1021


>SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score =  157 bits (381), Expect = 7e-39
 Identities = 79/150 (52%), Positives = 105/150 (70%)
 Frame = +3

Query: 57  EFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVV 236
           E S+E+ +   S  P V I R ETFS+ HRLHS  L+D++N +++GKCNN NGHGHNY V
Sbjct: 53  ESSVEV-SELHSKRPFVYITRSETFSACHRLHSTKLTDQQNIELFGKCNNKNGHGHNYKV 111

Query: 237 LVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVW 416
            VTV   VD  TGMVMN+  LK  I+  +L  LDHKNLD DV YF+T+ ST EN+A+Y++
Sbjct: 112 EVTVASTVDEDTGMVMNLVALKGKIE-EVLSELDHKNLDLDVEYFQTVVSTAENIAVYIY 170

Query: 417 DQLQRIMEKPQLLHEVKILETEKNHVVYRG 506
           +QL R +    +L+EV++ ET+KN   YRG
Sbjct: 171 NQLNRGL-PDGILYEVRVHETDKNVAFYRG 199


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -1

Query: 266 RIYRTLYCYKNNIIMTVTIRIV 201
           RIYR+L+ YKN++ M ++I I+
Sbjct: 58  RIYRSLFTYKNSLTMIISIWII 79


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 156 PFLSDEENKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDL 299
           P   DEE  K +G+  NP  +G N     + + P D + G++    DL
Sbjct: 471 PQSMDEEGPKHHGQTTNPKHNGGNKETTSSSQTPTDYKPGIIEVAVDL 518


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +3

Query: 177  NKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAIL--EPLDHKNL 350
            +KK   +    +  GH+ +  V V+    P+ G+V ++ + KK  K      +PL  K+ 
Sbjct: 986  SKKESKESKRDSKKGHDQIDAVDVQLQDTPKNGLVSDVVETKKNSKKEKFKKKPLKSKSA 1045

Query: 351  DNDVPYFKTMASTTEN-VAIYVWDQ 422
            +N V   +T  +  ++    +VW+Q
Sbjct: 1046 ENLVEAQRTDLTIVQSPYTEWVWNQ 1070


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 620  YKNIQDSR----ILLVRI*GNFMRNMTSVTRGVRLFPRVCITTTVHNMIF 483
            YK IQ       +L++ +   F+RN+  + + + + P+ C+   V  M+F
Sbjct: 942  YKGIQPESLSLAVLIIALLTFFLRNVNLMQKAINILPKDCVPWRVRYMLF 991


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 285  NITDLKKYIKTAILEPLDHKNLDN--DVPYFKTMASTTENV 401
            N TDL +  ++ +++ +D KNL N  D  Y +T A T  N+
Sbjct: 1009 NKTDLAEDEESRVVKTIDGKNLANQYDALYMETSAKTGNNI 1049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,568,071
Number of Sequences: 59808
Number of extensions: 375625
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)