Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30634
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.15
At3g49990.1 68416.m05466 expressed protein 32 0.36
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.47
At5g63550.1 68418.m07976 expressed protein 31 1.1
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 31 1.1
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.5
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 3.0
At1g12080.2 68414.m01397 expressed protein 29 3.3
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.4
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 4.4
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 5.8
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 28 7.7
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 28 7.7
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 7.7
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 416 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 568
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 413 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 592
+P A+ D+K E P A+P KT Q + E K+E+ +A AE A II K
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE--KREARIIKKQTK 477
Query: 593 KIDLAPTVESDAA 631
+ T + A
Sbjct: 478 MLYCGETQRAQRA 490
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -3
Query: 222 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 118
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 410 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 589
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 590 KKIDLAP 610
K +P
Sbjct: 377 AKSTSSP 383
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 416 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-----TDAEGSADSAAIIP 580
P E K + K EE + E+ KTE ++ AE +EEK +A T E + A I
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPATVETKKEEILAAPAPIV 182
Query: 581 NMVKKID--LAPTVESDAAAVPEI*DSWKQPML 673
KK + +AP A P + ++ K+ +L
Sbjct: 183 AETKKEETPVAPAPVETKPAAPVVAETKKEEIL 215
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 287 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 463
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 464 AQPEDSKTEVQATV-AEISKEEK 529
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.1 bits (57), Expect(2) = 3.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 410 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 550
E+P E+K ++ V+ +A+PE S+++ + T E + E KP T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154
Score = 20.6 bits (41), Expect(2) = 3.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +2
Query: 299 IPEAKKDDIAPEDS 340
+PE K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = +2
Query: 404 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 583
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 584 MVKKIDLAPTVESDAAAVPEI 646
KK ++ +++ AA E+
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEV 131
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 284 DEVPAIPEAKKDDIAPE 334
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +2
Query: 398 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 556
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 557 ADSAAIIPNMVK 592
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 420 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 533
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 410 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 589
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 590 KKIDLAPTVESDAAAVPE 643
+++ + A AV E
Sbjct: 188 PEVEEKKEEATPAPAVVE 205
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 410 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 589
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 590 KKIDLAPTVESDAAAVPE 643
+++ + A AV E
Sbjct: 188 PEVEEKKEEATPAPAVVE 205
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 419 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 568
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,019
Number of Sequences: 28952
Number of extensions: 190209
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -