Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.17 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.17 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.2  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 203 ALSGKQAYDPPDGELLPSPMDFSNARGIAKPLPTVKHSPQASYE 72
           ALSG  +   P G +LPSP     +  ++   P +  SP   +E
Sbjct: 686 ALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHE 729


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 203 ALSGKQAYDPPDGELLPSPMDFSNARGIAKPLPTVKHSPQASYE 72
           ALSG  +   P G +LPSP     +  ++   P +  SP   +E
Sbjct: 578 ALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHE 621


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 376 FFYIRADQLIGDLRLNGYLKPQKCILQLPQDTDRRFELERI 254
           F   RA  L+  L  N   K      ++P D  +RF +E+I
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVWKRIPHDYRKRFRMEKI 248


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 279 IEGSNWNAFACFLVMATMWAYNFFYC 202
           + G+  NAF+C+ V+A +      YC
Sbjct: 68  VMGTIVNAFSCYTVLAPVLCKRQQYC 93


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 148 GDGNNSPSGG 177
           G GNN P GG
Sbjct: 530 GSGNNQPPGG 539


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,504
Number of Sequences: 336
Number of extensions: 4066
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)