Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32352| Best HMM Match : Pox_A32 (HMM E-Value=2.2)                   30   1.4  
SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 30   1.9  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   27   9.9  

>SB_32352| Best HMM Match : Pox_A32 (HMM E-Value=2.2)
          Length = 353

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 176 PPDGELLPSPMDFSNARGIAKPLPTVKH 93
           PPD  LLP+P++     G+ +P P+VKH
Sbjct: 307 PPDPTLLPTPINI----GLKRPAPSVKH 330


>SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 537

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 231 LPLLKSKQMRSSSNLRSVSWGSCS 302
           +P  +  +MRS S +R VSWG CS
Sbjct: 109 IPSSEVLRMRSLSTIRGVSWGQCS 132


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 216  YKPTLLPLLKSKQMRSSSNLRSVSWGSCSMHFC 314
            Y P +  L +S  +R  + ++ +SW SC+ + C
Sbjct: 1185 YNPKIAKLKESNPIRWWNEIKKLSWASCNDNQC 1217


>SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 184 HTTHLMVSCYRRPWISAMPGA 122
           HTT   V C+ +PW+++ P A
Sbjct: 204 HTTSCGVRCFPQPWVTSRPEA 224


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 425 CHPYYVIDTRYKTRISFFLHQGRPTNR*LEVKWLLE 318
           C P  + D+RY T ++F     R ++  +  KWL++
Sbjct: 23  CVPRCIGDSRYNTELTFHRIPSRTSDEEIRKKWLVK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,616,817
Number of Sequences: 59808
Number of extensions: 477130
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)