Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006768-4|AAF60575.1|  729|Caenorhabditis elegans Hypothetical ...    38   0.005
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    27   8.6  

>AC006768-4|AAF60575.1|  729|Caenorhabditis elegans Hypothetical
           protein Y45G12B.1a protein.
          Length = 729

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
 Frame = +1

Query: 439 ISQSLQKPL-SGKLDVK----LKQLEDYFMTDPISRASPTMAKCIQAVIKQKQSPY 591
           + Q+LQ    +G +DV     L++L DY+ T+ ISR S +MA+  +A I+ K +PY
Sbjct: 665 VKQALQLAQPTGSIDVDVSPVLRELSDYYQTNVISRYSRSMAQARKAAIENKTNPY 720


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 564 GLDAFGHSWRGPTDRVRHEVVFELLQFHI*FTRQGFLKAL*NLYIFMPSILRYRYQIQDQ 385
           GL+    S      ++R  V  ELLQ++     Q +   + N+   +PS+L   Y++ D 
Sbjct: 291 GLEGQSESCMETCKKIRSTVQRELLQYYAGKRTQEYSIRMGNVLSLLPSVLSSTYKMLDD 350

Query: 384 NKFFF 370
            +  +
Sbjct: 351 MELMY 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,962
Number of Sequences: 27780
Number of extensions: 360581
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)