Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30630
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 314 4e-86
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 36 0.021
SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.0
SB_23739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_53438| Best HMM Match : Ank (HMM E-Value=6.7e-05) 28 5.5
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_39532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8) 28 5.5
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1) 27 7.3
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5) 27 7.3
SB_46971| Best HMM Match : EspF (HMM E-Value=3.1) 27 7.3
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 314 bits (770), Expect = 4e-86
Identities = 143/178 (80%), Positives = 162/178 (91%)
Frame = +2
Query: 2 KKLAQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLV 181
KKLAQRKHFPSINWLISYSKYMRALDD+YEKNYPEFV LRTKVKEILQEEEDLSEIVQLV
Sbjct: 295 KKLAQRKHFPSINWLISYSKYMRALDDYYEKNYPEFVALRTKVKEILQEEEDLSEIVQLV 354
Query: 182 GKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVE 361
GK SLAE+DKITLEVAKL+KDDFLQQN Y+ YD+FCPFYKTVGML NI+ FYDM+RH+VE
Sbjct: 355 GKGSLAESDKITLEVAKLIKDDFLQQNGYTPYDKFCPFYKTVGMLSNIVAFYDMARHSVE 414
Query: 362 STAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSAAFRN 535
+TAQ++NKVTWNVI++ MG+ +Y LSSMKFKDP+KDGE KIKADF +L E + FR+
Sbjct: 415 TTAQAENKVTWNVIKENMGDAIYALSSMKFKDPIKDGEAKIKADFAELHEQLQQGFRS 472
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITL----EVAKLLKDDFLQQNSYSSYD-RFCP 292
V++ILQ+ + L +I+ ++G L+E DK+T+ ++ K L F+ ++ +D + P
Sbjct: 344 VQKILQDYKSLQDIIAILGMDELSEDDKLTVARARKIQKFLSQPFVTAEVFTGHDGKLVP 403
Query: 293 FYKTV 307
+T+
Sbjct: 404 LKETI 408
>SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTV 307
+ + E D+++I+ +GKASL D T + A L+ D +++ + F + V
Sbjct: 146 INALKSERTDIADILLEIGKASLQVWDSETGKTASELRKDIIKRRKRRPFSIPSAFLREV 205
Query: 308 G 310
G
Sbjct: 206 G 206
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 68 RALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITL 220
R L++FY + PE +PL T + + E+D+S + + A + K+ L
Sbjct: 2392 RFLNEFYNASIPENLPLGTSIVRVRAVEDDVSVGARFIYVIKDAASSKVFL 2442
>SB_23739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 68 RALDDFYEKNYPEF---VPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLE 223
+ + FYEK YP F P R+ V+ + ED +IV V K+ +AE + LE
Sbjct: 9 KTISGFYEKRYPIFKNVSPSRSSVRRQYRSSED--KIVLPVFKSFIAEINTRRLE 61
>SB_53438| Best HMM Match : Ank (HMM E-Value=6.7e-05)
Length = 166
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQ 259
+ + E D+++I+ +GKASL D T + A L+ D +++
Sbjct: 69 INALKSERTDIADILLEIGKASLQVWDSETGKTASELRKDIIKR 112
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 242 DDFLQQNSYSSYDRFCP--FYKT-VGMLKNIITFYDMSRHAVESTAQSDN 382
DD L +NS Y FCP Y T V ++K++I +S ++S + DN
Sbjct: 864 DDLLSRNSSIRYFVFCPNNKYTTWVTLVKSLIDNSTLSTFHIQSPSIDDN 913
>SB_39532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +2
Query: 2 KKLAQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVPL----RTKVKEILQEEED 157
K + K F IN + Y L DFYEK P F L R+ V+ + ED
Sbjct: 120 KTYTREKAFGLINEKYRLADYAERLSDFYEKRSPIFKILFPNSRSSVRRQYRSSED 175
>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 265 LFVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPR 408
+F ++LP +GG E ++R V+ +GGV R+ V PR
Sbjct: 109 IFAAIAMLPTGSEGGWFGEE--IVRAVSEKGGVRERPRESERVRESPR 154
>SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)
Length = 947
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 379 VGLRRGLHRVPRHVVERDDVLQHAHR 302
+ LRR L R+PR V R+D L H HR
Sbjct: 598 IALRRMLRRIPREDVLRND-LAHDHR 622
>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
Length = 1463
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 92 KNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETD-KITLEVAKLLKDDFLQQNSY 268
+ Y E + +++I++ E V ++G+ S ++ + T + + + +Q
Sbjct: 905 EEYFEKTGVHIDIQDIMERPE-----VYIIGRCSSSDVGTQTTFSLTTIYAEKQQRQGQV 959
Query: 269 SSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSDNKV 388
S+D F K +G L+N + D + H ++ +SD V
Sbjct: 960 ESFDGKVMFPKRIGFLRNAVE--DENTHIDWNSRKSDGTV 997
>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 2 KKLAQRKHFPSINWLISYSKYMRALDDFY 88
+++ QR+ FP +N+ + Y M + DF+
Sbjct: 338 EEVTQRRSFPRVNFQVDYGGEMMLVSDFH 366
>SB_33327| Best HMM Match : Tombus_movement (HMM E-Value=3.5)
Length = 527
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 442 GGELVEHVAHGVADDVPRDLVVGLRRGL 359
G + EH+ H +AD V + +G R L
Sbjct: 130 GASIAEHIKHAIADKVKNPVSLGFPRSL 157
>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
Length = 224
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 340 HVAARGGVHGAVRQQGHVERHPRRH 414
HVA R VH A+R + HV R H
Sbjct: 48 HVATRTRVHTAIRTRAHVAIRTRAH 72
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 442 GGELVEHVAHGVADDVPRDLVVGLRRGL 359
G + EH+ H +AD V + +G R L
Sbjct: 675 GASIAEHIKHAIADKVKNPVSLGFPRSL 702
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.1 bits (57), Expect = 9.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = -1
Query: 496 EIGLDLRFTVFHWVLELHGGELVEHVAHGVA--DDVPR-DLVVGLRRGLHRVPRHVVERD 326
E+G D FH+ L G + H+ + + ++P+ G+R P+ +
Sbjct: 911 ELGKDFSLKEFHYQLLSQGSSPLSHLKNSIERYGELPKLQDNCGIRNLSSSSPKRRTPGE 970
Query: 325 DVLQHAHRLVERAEAIVRRIAVLLQEVVFE--QLGDLERD 212
D+L + R VE + + +I L F+ + D+ RD
Sbjct: 971 DLLITSLRRVESRQTTLTKIRNDLNSDAFQDIDINDVSRD 1010
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,285
Number of Sequences: 59808
Number of extensions: 234757
Number of successful extensions: 1075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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