Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30630
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 220 4e-58
At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic subunit... 42 3e-04
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 34 0.069
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 32 0.28
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 32 0.28
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 32 0.28
At1g48405.1 68414.m05407 hypothetical protein 31 0.48
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 30 1.1
At4g28190.1 68417.m04041 expressed protein 29 1.5
At2g20825.1 68415.m02452 expressed protein 29 1.5
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 29 2.6
At5g23200.1 68418.m02713 expressed protein 28 3.4
At3g12270.1 68416.m01532 protein arginine N-methyltransferase fa... 28 3.4
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.5
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 28 4.5
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 4.5
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 4.5
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 27 7.9
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 27 7.9
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 27 7.9
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 220 bits (538), Expect = 4e-58
Identities = 101/178 (56%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Frame = +2
Query: 2 KKLAQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLV 181
KKLAQRKHFPS+NWLISYSKY AL+ FYEK P+F+ +RTK +E+LQ E+DL+EIVQLV
Sbjct: 440 KKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLV 499
Query: 182 GKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRHAVE 361
GK +LAE DKITLE AKLL++D+L QN+++ YD+FCPFYK+V M++NII FY+++ AVE
Sbjct: 500 GKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVE 559
Query: 362 STAQSD-NKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSAAFR 532
A D K+T+ +I+ +G++ Y+L S KF+DP +GE + F +L +D++A FR
Sbjct: 560 RAAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPA-EGEDTLVEKFKKLYDDLNAGFR 616
>At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic
subunit-related / V-ATPase-related / vacuolar proton
pump-related similar to Vacuolar ATP synthase catalytic
subunit A (V-ATPase A subunit) (Vacuolar proton pump
alpha subunit) (V-ATPase 69 kDa subunit) (SP:O23654)
[Arabidopsis thaliana]
Length = 93
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +2
Query: 269 SSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSD 379
++YD+F P YK+V M++NII FY+++ A++ A D
Sbjct: 32 TNYDKFSPSYKSVWMMRNIIHFYNLANQAIDRAAGVD 68
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.9 bits (74), Expect = 0.069
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +1
Query: 304 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 423
GGH +HH H ++H G G+HG Q GH +H HG +
Sbjct: 132 GGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQ 177
Score = 30.3 bits (65), Expect = 0.84
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +1
Query: 304 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 423
GGH EH H ++H G G HG Q GH +H HG +
Sbjct: 188 GGHGMEHQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQ 233
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +1
Query: 304 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 423
GGH +H H ++H G G HG Q GH +H HG +
Sbjct: 164 GGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQDMHGMQ 209
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 304 GGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQR 423
GGH +H + H G HG Q GH +H HG +
Sbjct: 148 GGHGMQHQGM--HGMQHQGGHGMQHQGGHGMQHQGMHGMQ 185
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQ 259
V+++LQ ++L +I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 451 VQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQ 493
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQ 259
V+++LQ ++L +I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 454 VQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQ 496
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 128 VKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQ 259
V+++LQ ++L +I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 451 VQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQ 493
>At1g48405.1 68414.m05407 hypothetical protein
Length = 297
Score = 31.1 bits (67), Expect = 0.48
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = +2
Query: 53 YSKYMRALDDFYEKNYPEFVPLRTKVK-EILQEEEDLSEIVQL-VGKASLAET--DKIT- 217
Y Y LD F +N + +P +I E E + Q+ V + + D ++
Sbjct: 60 YDGYATLLDRF-NQNPKQVIPHDNDTDTDITSEVESILSFQQMEVSTCDMQKNIEDLVSQ 118
Query: 218 LEVAKLLKDD--FLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSRH-AVESTAQSDNKV 388
L A L KD + Q + C KT+G+LK ++ DM + AVE TA +K+
Sbjct: 119 LVTANLEKDTAKHILQRREQTLQEAC---KTIGLLKKLVMLLDMEKEVAVEETANLGHKL 175
Query: 389 T 391
T
Sbjct: 176 T 176
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 119 RTKVKEILQEEEDLSEIVQLVGKASLAETDKIT--LEVAKLLKDDFLQQNSYS 271
+TK++ + QEE+ + + +L+ +AS A D+ T + + KLL + + SY+
Sbjct: 687 KTKLESLEQEEDMDASVAKLIDQASRANADRYTYAINLKKLLVEAVAHKWSYA 739
>At4g28190.1 68417.m04041 expressed protein
Length = 237
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 189 RPSRKLTRSRSRSPSCSKTTSC 254
R SRK+ R +RSPSC TSC
Sbjct: 189 RGSRKVYRGCTRSPSCKGCTSC 210
>At2g20825.1 68415.m02452 expressed protein
Length = 228
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 189 RPSRKLTRSRSRSPSCSKTTSC 254
R SRK+ R +RSPSC TSC
Sbjct: 179 RGSRKVFRGCTRSPSCKGCTSC 200
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 143 QEEEDLSEIVQLVGKASLAETDKIT--LEVAKLLKDDFLQQ 259
+EE+DLS++ Q + K S T + L++ K DDFL +
Sbjct: 60 KEEQDLSQVAQRICKISNDSTKSLAFLLQLPKYSADDFLDR 100
>At5g23200.1 68418.m02713 expressed protein
Length = 399
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 146 EEEDLSEIVQLVGKASLAETDK 211
EE D EI+++ GKA+L+E K
Sbjct: 51 EETDAEEIIEMAGKATLSEQQK 72
>At3g12270.1 68416.m01532 protein arginine N-methyltransferase
family protein similar to protein arginine
N-methyltransferase 3 from {Rattus norvegicus}
SP|O70467, {Homo sapiens} SP|O60678
Length = 590
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 119 RTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAK 232
R +V E LQ+ DLS V+ +G++S++ +DK + +K
Sbjct: 157 REEVMEELQKLGDLSIDVEALGESSMSNSDKCNINGSK 194
>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 495
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = +2
Query: 365 TAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSA 523
+A S+N++ + VI A+ ++++++ +K+ EPK+++ +LLED S+
Sbjct: 58 SASSNNRLRYEVI-SAVDQPTIEMTTIEIH--MKNQEPKVRSTVAKLLEDYSS 107
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
Frame = +2
Query: 59 KYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLL 238
KY+ A + EF +V E L + L + + E+ + +
Sbjct: 945 KYLSAFNSKLSAAQHEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTRKI 1004
Query: 239 KDDFLQQNSYSSYDRFCPFYKTV-GMLKNIITFYDMSRHAVESTAQSDNKVTWNVIRDAM 415
++ + SS R ++T+ GM ++ T DM + + ++ + + +
Sbjct: 1005 EEALHGNLNNSSSSRESSRFRTIHGMKLHLQTCMDMLERSRKKVIDRILEIDQTMEKPKL 1064
Query: 416 GNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSA 523
++ ++S+ K+ + DG P I + D+L ++ A
Sbjct: 1065 EDI-ERISNCKYCNKNSDGPPCIHCELDELFQEYEA 1099
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 180 SARRPSRKLTRSRSRSPSCSKTTS 251
S PSR ++RSRSRS S S ++S
Sbjct: 26 SGSSPSRSISRSRSRSRSLSSSSS 49
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 180 SARRPSRKLTRSRSRSPSCSKTTS 251
S PSR ++RSRSRS S S ++S
Sbjct: 26 SGSSPSRSISRSRSRSRSLSSSSS 49
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 86 YEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETD 208
+EK + + +PL++ + L +DL EI L +L E D
Sbjct: 634 FEKLWEKILPLKSLKRMDLSHSKDLKEIPDLSNATNLEELD 674
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 44 LISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETD 208
+I+ SKY+ F EK P+F + +L + SE + ASL+ +
Sbjct: 158 IINASKYLSTSASFLEKKQPDFFEGFLDYEPVLSPDNPFSEPTKASPTASLSSLE 212
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 44 LISYSKYMRALDDFYEKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETD 208
+I+ SKY+ F EK P+F + +L + SE + ASL+ +
Sbjct: 158 IINASKYLSTSASFLEKKQPDFFEGFLDYEPVLSPDNPFSEPTKASPTASLSSLE 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,614,628
Number of Sequences: 28952
Number of extensions: 161034
Number of successful extensions: 773
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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