Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30626
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)             184   4e-47
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)                      29   2.0  
SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   7.9  

>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score =  184 bits (448), Expect = 4e-47
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 7/187 (3%)
 Frame = +1

Query: 22  VPDLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDG 201
           VP+L K L  D Y++PY +EI RRY C+K I   I++ +GGLE F++GY+ +G      G
Sbjct: 135 VPELSKFLHDDPYIQPYVQEIERRYKCFKSIKTDIQNHEGGLEPFSRGYEKFGINRTASG 194

Query: 202 SVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQI 381
              +REWAPGAH + L G+FNGW+  SHP  + EYG WE++IP   +GS ++ H S+V++
Sbjct: 195 GQVYREWAPGAHGVFLIGDFNGWNRTSHPCKRNEYGVWELEIPCLDNGSLSIPHGSKVKV 254

Query: 382 IV----NDNLYRISPWASYVKPHEGFT---YQHFIYKPEQPYKFKHPKVDKPKSLRIYEC 540
            +     + + RISPW  Y  P +  T   Y+   + P  PY+FKH +  +PKSLR+YE 
Sbjct: 255 GIQLQSGEIVDRISPWIRYAAPPQDETNTVYEGINWDPPNPYQFKHTRPKRPKSLRVYEA 314

Query: 541 HVGIATS 561
           HVGIA++
Sbjct: 315 HVGIASN 321


>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
          Length = 482

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 155 NASKPPSHDSIRSQMSL*QAYL 90
           NA +PPSH SI+SQ S+ ++ L
Sbjct: 453 NAQRPPSHQSIKSQQSVIKSIL 474


>SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 415 WASYVKPHEGFTYQHFIYKPEQPYKFKHPKVDKPKSLRI 531
           W S V+P      Q + +  E   KFK   +D+P S+R+
Sbjct: 93  WFSSVRPERTAKIQTYHFSLEAKAKFKRRIIDEPYSMRM 131


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 372 TGVVFQCTRTIWICGDLNLPFAVLLFSEWMALRVPSIEFTS 250
           T V   CT   + C D    F +LLF   + +RV S+   S
Sbjct: 614 TSVQVLCTAPCYFCSDSLYRFVLLLFRLSVQVRVTSVRIVS 654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,171,890
Number of Sequences: 59808
Number of extensions: 482040
Number of successful extensions: 1249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)