Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30626
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta...   144   3e-35
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...   142   1e-34
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s...    88   3e-18
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    31   0.53 
At2g21710.1 68415.m02582 mitochondrial transcription termination...    29   1.6  
At3g28960.1 68416.m03620 amino acid transporter family protein l...    27   6.5  
At2g27980.1 68415.m03391 expressed protein                             27   6.5  
At1g25530.1 68414.m03170 lysine and histidine specific transport...    27   6.5  
At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ...    27   8.6  
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ...    27   8.6  
At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    27   8.6  

>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-2) identical to starch
           branching enzyme class II [Arabidopsis thaliana]
           GI:726490
          Length = 716

 Score =  144 bits (350), Expect = 3e-35
 Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 7/192 (3%)
 Frame = +1

Query: 7   PMEVPVP-DLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGP 183
           P  VP P D +K+ E D  L+ Y   +  RY  YK + + I+ ++GGLEAF++GY+  G 
Sbjct: 24  PRIVPPPGDGKKIYEIDPMLRTYNNHLDYRYGQYKRLREEIDKYEGGLEAFSRGYEKLGF 83

Query: 184 QFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKH 363
               D  +T+REWAPGA +  L G+FN W+S +    + E+G WEI +P N DGS A+ H
Sbjct: 84  S-RSDAGITYREWAPGAKAASLIGDFNNWNSNADIMTRNEFGVWEIFLPNNTDGSPAIPH 142

Query: 364 DSRVQIIVNDN---LYRISPWASY-VKPHEGFTYQHFIYKP--EQPYKFKHPKVDKPKSL 525
            SRV+I ++        I  W  + V+      +    Y P  E+ Y FKHP+  +PKSL
Sbjct: 143 GSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPFNGIYYDPPEEEKYVFKHPQPKRPKSL 202

Query: 526 RIYECHVGIATS 561
           RIYE HVG++++
Sbjct: 203 RIYEAHVGMSST 214


>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score =  142 bits (344), Expect = 1e-34
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 7/190 (3%)
 Frame = +1

Query: 13  EVPVP-DLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQF 189
           ++P P D +++ + D  L  +   +  RY  Y+ + + I+  +GGLEAF++GY+ +G   
Sbjct: 150 KIPPPGDGKRIYDIDPMLNSHRNHLDYRYGQYRKLREEIDKNEGGLEAFSRGYEIFGFTR 209

Query: 190 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 369
           +  G +T+REWAPGA +  L G+FN W++KS   A+ ++G WEI +P N DGS A+ H S
Sbjct: 210 SATG-ITYREWAPGAKAASLIGDFNNWNAKSDVMARNDFGVWEIFLPNNADGSPAIPHGS 268

Query: 370 RVQIIVNDN---LYRISPWASY-VKPHEGFTYQHFIYKP--EQPYKFKHPKVDKPKSLRI 531
           RV+I ++        I  W  Y V+P     Y    Y P  E  Y FKHP+  KP SLRI
Sbjct: 269 RVKIRMDTPSGIKDSIPAWIKYSVQPPGEIPYNGVYYDPPEEDKYAFKHPRPKKPTSLRI 328

Query: 532 YECHVGIATS 561
           YE HVG++++
Sbjct: 329 YESHVGMSST 338


>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
           similar to 1,4-alpha-glucan branching enzyme [Solanum
           tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
           (EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
           tuberosum} SP|P30924; contains Pfam profiles: PF00128
           Alpha amylase catalytic domain, PF02922 Isoamylase
           N-terminal domain
          Length = 777

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
 Frame = +1

Query: 82  IRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEF 261
           +R R+   KD+ D I         F  G++  G   + +  V + +W PG+    + G+F
Sbjct: 89  LRERHKALKDLKDEIFKRHFDFRDFASGFELLGMHRHMEHRVDFMDWGPGSRYGAIIGDF 148

Query: 262 NGWDSKSHP-----FAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDN---LYRISPW 417
           NGW    +      F   +YG W I +        A+ H S+ ++  N     L R+  W
Sbjct: 149 NGWSPTENAAREGLFGHDDYGYWFIILEDKLRE--AVPHGSKYRLYFNTPDGPLERVPAW 206

Query: 418 ASYVKPHEGFTYQHFIY---KPEQPYKFKHPKVDKPKSLRIYECHVGIATS 561
           A+YV+P +     + I+    PE  YK+K+ K   P+SLRIYECHVGI+ S
Sbjct: 207 ATYVQPEDEGKQAYAIHWEPSPEAAYKWKYSKPKVPESLRIYECHVGISGS 257


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 60  FEAIRKRN*KEICLLQRHLGPYRIMGRWLRSIHEGLQI 173
           F   RK +  + CL+  H    R+  + L S+H GLQI
Sbjct: 714 FRLARKASYLQACLMHAHFSKVRLRTQALASLHSGLQI 751


>At2g21710.1 68415.m02582 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 640

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  TRFREIIRKRRLFEAIRKRN*KEICLLQRHLGPYRIMGRWLRSIH 158
           + F  ++R  +  E    R  K IC+ + +L   RIM  WL+SIH
Sbjct: 212 SNFVPLVRWLKHHELSYNRIAKIICMSKGNLDSIRIMIEWLKSIH 256


>At3g28960.1 68416.m03620 amino acid transporter family protein low
           similarity to vesicular inhibitory amino acid
           transporter [Mus musculus] GI:2826776; contains
           INTERPRO:IPR002422 amino acid/polyamine transporter,
           family II
          Length = 405

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 368 ESCFNAHEPSGFAGI*ISHLPYSFLANGWL 279
           ++CFNA   +  +GI I  +PYS    GWL
Sbjct: 20  KTCFNAL--NALSGIGILSVPYSLARGGWL 47


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 361 VSMHTNHLDLRGFESPICRTP 299
           V MH N +++ GF+SP   TP
Sbjct: 344 VDMHANDVEMDGFQSPSVTTP 364


>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GI:2576361 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 440

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
 Frame = -1

Query: 408 YPVQVVVHY----DLDTGVVFQCTRTIWICGDLNLPFAVLLFSEWMALRVPSIEFTSKM* 241
           +PV ++ ++    D+D  V+    R  W+    NL   V +   +    +P  +   +M 
Sbjct: 274 FPVALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERM- 332

Query: 240 AMRSWSPLAPRNGAILIKLGSVVFVALRECF*ATVP*FDTVPNVFVA-SISPSNF---SF 73
                +    ++G +L      ++VA       + P F  +   F     +P++F   S 
Sbjct: 333 ---MVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSI 389

Query: 72  VWLQI 58
           +WL I
Sbjct: 390 MWLII 394


>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 316 EIQIPANPDGSCALKHDSRVQIIVNDNLYR 405
           +I+  ANP G C L H S   ++    L R
Sbjct: 152 QIETQANPRGLCCLSHHSNTSVLACPGLNR 181


>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 316 EIQIPANPDGSCALKHDSRVQIIVNDNLYR 405
           +I+  ANP G C L H S   ++    L R
Sbjct: 152 QIETQANPRGLCCLSHHSNTSVLACPGLNR 181


>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 525 KRLWLVYLWMLEFVGLF 475
           KR+W++ LW++  +GLF
Sbjct: 386 KRIWVLSLWIMIMIGLF 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,398
Number of Sequences: 28952
Number of extensions: 328709
Number of successful extensions: 831
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)