Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30622
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      31   0.97 
SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)                     28   9.1  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                28   9.1  

>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 120  KSKSNRYTAKNIKHSRLGLFHRETETRLHITPSQIFASI*VNITWDAAVRSQSHRQQSLP 299
            K K N+YTA+ ++H+RLG    + ETR++    +      V I   ++V+ Q+  +  + 
Sbjct: 1051 KKKENKYTARRLQHTRLG---EKIETRVNTFLQKQGCPAEVTIRVVSSVQKQAEIKPGMK 1107

Query: 300  TK 305
            T+
Sbjct: 1108 TR 1109


>SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)
          Length = 182

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  LYGLISAKSKSNRYTAKNIKHSRLG 173
           L  L SAK K+  Y AKN K +R+G
Sbjct: 27  LLSLQSAKKKAENYAAKNDKKARVG 51


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 627 VFIGETNVQLKVEWAHRNAQESEIFRV 707
           +F   TN++L V WA +  +E+++F +
Sbjct: 87  IFEDNTNLKLAVRWALKKIEETKVFNI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,468,320
Number of Sequences: 59808
Number of extensions: 418844
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)