Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30620
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 310 6e-85
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 167 4e-42
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 162 2e-40
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 44 9e-05
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 43 2e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 43 2e-04
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 42 3e-04
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 42 4e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 41 7e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 41 7e-04
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 40 0.001
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 40 0.001
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 40 0.002
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 40 0.002
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 39 0.003
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 39 0.003
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 39 0.003
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 39 0.003
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 39 0.004
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 39 0.004
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 39 0.004
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 39 0.004
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 39 0.004
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 38 0.006
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 38 0.006
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 38 0.006
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 38 0.006
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 38 0.006
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 38 0.006
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 38 0.006
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 38 0.008
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 38 0.008
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 37 0.011
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 37 0.011
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 37 0.011
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.011
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 37 0.014
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 37 0.014
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 37 0.014
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 36 0.019
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 36 0.019
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 36 0.019
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.019
At1g73170.1 68414.m08466 expressed protein 36 0.019
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 36 0.019
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.019
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 36 0.025
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 36 0.025
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 36 0.025
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 36 0.025
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 36 0.025
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 36 0.025
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 36 0.033
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 36 0.033
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 35 0.043
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 35 0.043
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 35 0.043
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 35 0.043
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 35 0.043
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 35 0.043
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 35 0.043
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 35 0.057
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 35 0.057
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 35 0.057
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 35 0.057
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 35 0.057
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 34 0.075
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 34 0.075
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 34 0.075
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 34 0.075
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 34 0.075
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 34 0.075
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 33 0.13
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 33 0.13
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.13
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.13
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.23
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.23
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 33 0.23
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.23
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 32 0.30
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 32 0.30
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 32 0.40
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 32 0.40
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 31 0.53
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 31 0.53
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 31 0.53
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 31 0.53
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 31 0.70
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 0.70
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 31 0.70
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 31 0.70
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 31 0.70
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 31 0.93
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 31 0.93
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 31 0.93
At4g19060.1 68417.m02808 disease resistance protein-related cont... 31 0.93
At4g14700.1 68417.m02259 replication control protein, putative s... 31 0.93
At4g12620.1 68417.m01988 replication control protein, putative s... 31 0.93
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.93
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 31 0.93
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 31 0.93
At5g66005.2 68418.m08311 Expressed protein 30 1.2
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.2
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 30 1.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.2
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 30 1.2
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 30 1.2
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR... 30 1.6
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 30 1.6
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 30 1.6
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 30 1.6
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 30 1.6
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 30 1.6
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 30 1.6
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 2.1
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 29 2.1
At4g14746.1 68417.m02269 expressed protein 29 2.1
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 29 2.1
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 29 2.1
At1g77620.1 68414.m09037 expressed protein 29 2.1
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 29 2.8
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.8
At4g12020.1 68417.m01912 protein kinase family protein similar t... 29 2.8
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.8
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 2.8
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 29 2.8
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 3.8
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 3.8
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 29 3.8
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 3.8
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 29 3.8
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic... 29 3.8
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 3.8
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 28 5.0
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 28 5.0
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 28 5.0
At5g45440.1 68418.m05583 disease resistance protein-related cont... 28 5.0
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 5.0
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 5.0
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 5.0
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 28 5.0
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 5.0
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 28 5.0
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 28 5.0
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 28 6.6
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 6.6
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 6.6
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 28 6.6
At4g27420.1 68417.m03941 ABC transporter family protein D.melano... 28 6.6
At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS cla... 28 6.6
At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS cla... 28 6.6
At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla... 28 6.6
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 6.6
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 28 6.6
At3g45450.1 68416.m04908 Clp amino terminal domain-containing pr... 28 6.6
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 28 6.6
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 28 6.6
At2g36380.1 68415.m04464 ABC transporter family protein related ... 28 6.6
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 28 6.6
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 6.6
At1g31770.1 68414.m03899 ABC transporter family protein contains... 28 6.6
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 6.6
At5g63590.1 68418.m07983 flavonol synthase, putative similar to ... 27 8.7
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 8.7
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 27 8.7
At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family prot... 27 8.7
At5g42470.1 68418.m05170 expressed protein low similarity to BRE... 27 8.7
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 27 8.7
At4g39540.2 68417.m05591 shikimate kinase family protein similar... 27 8.7
At4g39540.1 68417.m05590 shikimate kinase family protein similar... 27 8.7
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 27 8.7
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 8.7
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 8.7
At2g37010.1 68415.m04539 ABC transporter family protein contains... 27 8.7
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 27 8.7
At2g19490.1 68415.m02278 recA family protein contains Pfam profi... 27 8.7
At2g01320.4 68415.m00049 ABC transporter family protein 27 8.7
At2g01320.3 68415.m00047 ABC transporter family protein 27 8.7
At2g01320.2 68415.m00046 ABC transporter family protein 27 8.7
At2g01320.1 68415.m00048 ABC transporter family protein 27 8.7
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 27 8.7
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 310 bits (761), Expect = 6e-85
Identities = 145/188 (77%), Positives = 171/188 (90%)
Frame = +2
Query: 77 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 256
+KIEE++STAK QRI+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG+VVDMI+ KK
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 436
MAG+ALLLAGPPGTGKTA+AL I+QELG+KVPFCPMVGSEVYS+E+KKTEVLMENFRRAI
Sbjct: 64 MAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 123
Query: 437 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESL 616
GLRI+ETKEVYEGEVTEL+P ETE+ GGYGK++SHV+I LKT KGTK LKLDPTIY++L
Sbjct: 124 GLRIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDAL 183
Query: 617 QKEKVKLG 640
KEKV +G
Sbjct: 184 IKEKVAVG 191
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 619 KGKGEVGDVIYIEANSGAV 675
K K VGDVIYIEANSGAV
Sbjct: 185 KEKVAVGDVIYIEANSGAV 203
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 167 bits (407), Expect = 4e-42
Identities = 86/188 (45%), Positives = 123/188 (65%)
Frame = +2
Query: 77 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 256
+K+ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+++ MIR K
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGK 63
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 436
+AGRA+L+AG PGTGKTAIA+ +A+ LG + PF + GSE++S E+ KTE L ++FR+AI
Sbjct: 64 IAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAI 123
Query: 437 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESL 616
G+RI+E EV EGEV E V+ + PA G + +KT + + E+L
Sbjct: 124 GVRIKEETEVIEGEVVE---VQIDRPASS-GVASKSGKMTMKTTDMETVYDMGAKMIEAL 179
Query: 617 QKEKVKLG 640
KEKV+ G
Sbjct: 180 NKEKVQSG 187
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 162 bits (393), Expect = 2e-40
Identities = 84/199 (42%), Positives = 121/199 (60%)
Frame = +2
Query: 77 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 256
+++ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+ +++IR K
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGK 63
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 436
++GRA+L+AG PGTGK AIA+ IA+ LG + PF + GSE++S E+ KTE L + FR+AI
Sbjct: 64 ISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAI 123
Query: 437 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESL 616
G+RI+E +V EGEV + + PA G I +KT L + E L
Sbjct: 124 GVRIKEETDVIEGEV---VTISIDRPASSGGSVKKTGKITMKTTDMESNFDLGWKLIEPL 180
Query: 617 QKEKVKLGMSFTLKLILGQ 673
KEKV+ G L G+
Sbjct: 181 DKEKVQSGDVIVLDRFCGK 199
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 44.0 bits (99), Expect = 9e-05
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Frame = +2
Query: 140 KGLGLDENGVPIQMAA----GLVGQESAREAAGIVVDMIRSKK----MAGR---ALLLAG 286
KGLGL E P ++ + G + A+ +V +R K + G+ +LL G
Sbjct: 208 KGLGLHEEVQPSMDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVG 267
Query: 287 PPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
PPGTGKT +A AIA E G VPF GSE
Sbjct: 268 PPGTGKTMLARAIAGEAG--VPFFSCSGSE 295
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 257 KGVLLTGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE 291
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 254 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 288
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 261 KGVLLIGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 295
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+LL GPPG GKT +A AIA E G VPF M GSE
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE 498
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
R +LL GPPGTGKT +A A+A E G VPF + SE
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAG--VPFFSVSASE 402
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAI---AQELGTKVPFCPMVGSEVYSTEIKKTE 406
R +LL GPPGTGKT IA A+ A + G KV F G++V S + + E
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 465
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 415
D+ + + G+ LLL GPPGTGKT I AIA E K F + S + S I + E L+
Sbjct: 34 DIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGE--AKATFFYISASSLTSKWIGEGEKLV 91
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 176 QMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ A G++G + A++A ++ I GR LL GPP +GKT + LA+A +L
Sbjct: 168 ESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKL 221
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 415
D+ + R LLL GPPG GKT +A A+A E ++ F + S + S + + E L+
Sbjct: 240 DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE--SQATFFNVSASSLTSKWVGEAEKLV 297
Query: 416 EN-FRRAIGLRIRETKEVYEGEVTEL--TPVETENPA 517
+ F+ AI R+ ++ E+ + T +EN A
Sbjct: 298 KTLFQVAIS---RQPSVIFMDEIDSIMSTRSTSENEA 331
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 424
R +LL+GPPGTGKT A +A+E G +PF G+E +E + E F
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKSGAAKINEMF 577
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ +LL G PGTGKT +A AIA E G VPF GSE
Sbjct: 396 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE 430
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 284 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 318
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 185 AGLVGQESAREAAGIVV----DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVP 352
AGL + A + A I+ K+ RA LL GPPGTGK+ +A A+A E +
Sbjct: 135 AGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADS--T 192
Query: 353 FCPMVGSEVYSTEIKKTEVLMEN 421
F + S++ S + ++E L+ N
Sbjct: 193 FFSVSSSDLVSKWMGESEKLVSN 215
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 296 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 330
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
R +LL GPPGTGKT +A A+A T F +VGSE
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 224
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL----GTKVPFCPMVGSEVYS 385
R +LL GPPGTGKT++ A+AQ+L ++ P C ++ +S
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHS 246
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ LL GPPGTGKT +A A A E G VPF + GS+
Sbjct: 356 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSD 390
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
R +LL GPPGTGKT +A AIA+E G
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAG 580
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
R +LL GPPGTGKT +A AIA+E G
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAG 575
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 433
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 433
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
R +LL GPPGTGKT +A AIA E G
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAG 473
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPM 364
RA+L GPPGTGKT+ A IA + G + + P+
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQAGIPLLYVPL 394
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 433
+ +L+ GPPGTGKT++A A+ G V F + G E+ S + ++E L E FR A
Sbjct: 419 KGVLIHGPPGTGKTSLARTFARHSG--VNFFSVNGPEIISQYLGESEKALDEVFRSA 473
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 433
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 293
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 433
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 516 KGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANVREIFDKA 570
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 433
+ +LL GPPG+GKT IA A+A E G FC + G E+ S ++E N R+A
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKA 292
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 433
+ +L GPPG GKT +A AIA E + F + G E+ + ++E + E F +A
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFDKA 569
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTK-VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGL 442
R LLL GPPGTGKT++ A+ QE + P ++ E +K VL E F A
Sbjct: 57 RGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEK--VLREAFAEASSH 114
Query: 443 RIRETKEV-YEGEVTELTP 496
+ + V + E+ L P
Sbjct: 115 AVSDKPSVIFIDEIDVLCP 133
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 385
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 223
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 385
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 424
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ +LL GPPGTGKT +A AIA E G +PF G++
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEAG--LPFFAANGTD 384
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 385
+L GPPG GKT +A AIA E G VPF + +EV S
Sbjct: 270 ILFHGPPGCGKTKLANAIANEAG--VPFYKISATEVIS 305
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 433
LL GPPG GKT IA A A E G F + G+E+ + + ++E+ + F+RA
Sbjct: 566 LLYGPPGCGKTLIAKAAANEAGAN--FMHIKGAELLNKYVGESELAIRTLFQRA 617
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGT 343
+ +L+ GPPGTGKT +A A+A E GT
Sbjct: 273 KGVLMFGPPGTGKTLLAKAVATECGT 298
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
+ LL GPPGTGKT +A A A E + VPF + GS+
Sbjct: 361 KGALLVGPPGTGKTLLAKATAGE--SAVPFLSISGSD 395
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
+ +LL GPPGTGKT +A AIA+E G
Sbjct: 120 KGVLLYGPPGTGKTMLAKAIAKESG 144
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 185 AGLVGQESAREAAGIVVDMIRSKKM-------AGRALLLAGPPGTGKTAIALAIAQELGT 343
A + G + A+E +V+ +R+ + R +LL G PGTGKT +A A+A E
Sbjct: 325 ADVAGVDEAKEELEEIVEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--A 382
Query: 344 KVPFCPMVGSE 376
+VPF SE
Sbjct: 383 EVPFISCSASE 393
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 176 QMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ A G++G A++A ++ + R LL GPP +GKT + LA+A +L
Sbjct: 166 EAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKL 219
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 36.3 bits (80), Expect = 0.019
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 442
+ +LL GPPGTGKT +A A+A T F + GSE+ I + + ++ E F A
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMVRELFVMA--- 250
Query: 443 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGL 559
R ++ E+ + E+ +G V ++ L
Sbjct: 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 36.3 bits (80), Expect = 0.019
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 442
+ +LL GPPGTGKT +A A+A T F + GSE+ I + + ++ E F A
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMVRELFVMA--- 250
Query: 443 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGL 559
R ++ E+ + E+ +G V ++ L
Sbjct: 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 406
+ +LL GPPGTGKT +A I + L K P + G EV S + +TE
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDPKI-VNGPEVLSKFVGETE 296
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
LL GP G+GKTA+A I + + P+ +V +E
Sbjct: 534 LLEGPSGSGKTALAATIG--IDSDFPYVKIVSAE 565
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
+ +LL GPPGTGKT +A A+A E G
Sbjct: 999 KGILLFGPPGTGKTMLAKAVATEAG 1023
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 206 SAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 340
S R +A ++ D+++ G +LLL GPPG GKT + +A+ LG
Sbjct: 182 SVRGSANLLRDLVQD----GNSLLLIGPPGVGKTTMIREVARMLG 222
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 442
+ +L GPPGTGKT +A A+A T F ++GSE+ + + ++ E F+ A
Sbjct: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSELVQKYVGEGARMVRELFQMA--- 257
Query: 443 RIRETKEVYEGEVTELTPVETENPAGG 523
R ++ V+ EV + ++ GG
Sbjct: 258 RSKKACIVFFDEVDAIGGARFDDGVGG 284
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
+ +LL GPPGTGKT +A A+A E G
Sbjct: 986 KGILLFGPPGTGKTMLAKAVATEAG 1010
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGT 343
+ +LL GPPGTGKT +A A+A E T
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATECNT 171
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGT 343
+ +LL GPPGTGKT +A A+A E T
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATECNT 162
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
++D I R LL GPP +GKT + LA+A LGT +
Sbjct: 150 ILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+S K R ++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 379 KSHKAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 421
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/73 (28%), Positives = 40/73 (54%)
Frame = +2
Query: 107 KTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAG 286
K ++S+ SH + L E P + +VGQ+ + ++ + S ++ +++ G
Sbjct: 88 KRHKLSSSSHRQHQPLSERMRP-RTLDDVVGQDHLLSPSSLLRSAVESNRLP--SIVFWG 144
Query: 287 PPGTGKTAIALAI 325
PPGTGKT+IA ++
Sbjct: 145 PPGTGKTSIAKSL 157
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 406
D+ S +LL GPPGTGKT +A A+A E + F + G E+ + I ++E
Sbjct: 682 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE--CSLNFLSVKGPELINMYIGESE 736
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +2
Query: 227 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 397
I V +R G+ + L+GPPG GKT+I +IA+ L K F VG EIK
Sbjct: 446 IAVGRLRGTSQ-GKIICLSGPPGVGKTSIGRSIARALNRKF-FRFSVGGLADVAEIK 500
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
L+L+GPPGTGKT LA+A EL
Sbjct: 51 LILSGPPGTGKTTSILALAHEL 72
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQE 334
+ +LL GPPGTGKT +A AIA+E
Sbjct: 123 KGVLLYGPPGTGKTMLAKAIARE 145
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 433
+ +LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQE 334
+ +LL GPPGTGKT +A A+A+E
Sbjct: 856 KGILLFGPPGTGKTMLAKAVAKE 878
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELG 340
R K+ G +LL GPPG GKT +A A+A E G
Sbjct: 438 RGVKIPG-GILLCGPPGVGKTLLAKAVAGEAG 468
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV---GSEVYSTEIKKTEVLMENFRRA 433
GR LL GPPG+GK+ + LA+A +L + + G + +K+T +
Sbjct: 186 GRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNH 245
Query: 434 IG-LRIRET 457
I L +RET
Sbjct: 246 IAELTVRET 254
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
LLL GPPGTGKT+ LA+A++L
Sbjct: 75 LLLYGPPGTGKTSTILAVARKL 96
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 433
+ +LL GPPGTGKT +A AIA + F +V S + I + ++ E F A
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLIREMFNYA 228
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
R +LL G PGTGKT +A A+A E + VPF SE
Sbjct: 363 RGVLLVGLPGTGKTLLAKAVAGE--SDVPFISCSASE 397
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 34.7 bits (76), Expect = 0.057
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 143 GLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALA 322
G+G+ P Q +V E + G V ++ + K +LLAG G GKT +
Sbjct: 137 GMGVIRGVKPDQQLVKIVHDELVKLMGGEVSEL-QFAKSGPTVILLAGLQGVGKTTVCAK 195
Query: 323 IAQELGTKVPFCPMVGSEVY 382
+A L + C ++ +VY
Sbjct: 196 LACYLKKQGKSCMLIAGDVY 215
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 433
+ +L GPPG+GKT +A A+A G F +VGSE+ I + ++ E F+ A
Sbjct: 240 KGVLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSELVQKYIGEGARMVRELFQMA 294
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
+L GPPGTGKT ALAIA +L
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
+L GPPGTGKT ALAIA +L
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQL 66
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTK 346
G L GPPG GKT++A +IA LG K
Sbjct: 401 GPVLCFVGPPGVGKTSLASSIAAALGRK 428
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+S + R ++ GPPGTGKT +A IA++ G + + M G +V
Sbjct: 364 KSHQAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 406
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 227 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 346
I V +R G+ + L+GPPG GKT+I +IA+ L K
Sbjct: 429 IAVGRLRGTSQ-GKIICLSGPPGVGKTSIGRSIARALDRK 467
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 34.3 bits (75), Expect = 0.075
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +2
Query: 203 ESAREAAGIVVDMIRSKKM-------AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCP 361
ES RE VV +++ K A R +L+ G GTGKT++ALAIA E +VP
Sbjct: 430 ESMREEINEVVAFLQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE--ARVPVVN 487
Query: 362 MVGSEV 379
+ E+
Sbjct: 488 VEAQEL 493
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS-TEIKKTEVLMENFRRAI 436
R LL GPPGTGK+++ A+A LG + + +EV+S +E++K +LM+ ++I
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLGYDIYDLEL--TEVHSNSELRK--LLMKTSSKSI 291
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGKT++ AIA L
Sbjct: 246 RGYLLYGPPGTGKTSLVAAIANYL 269
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +2
Query: 131 SHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMI---RSKKMAGR---ALLLAGPP 292
S +K + +DE G + ++ IV+ M R +K+ R +LL GPP
Sbjct: 155 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPP 214
Query: 293 GTGKTAIALAIAQELGTKVPFCPMVGSEV 379
GTGKT +A A A + T F + G ++
Sbjct: 215 GTGKTLMARACAAQ--TNATFLKLAGPQL 241
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
R +LL GPPGTGKT A +A++ G + + M G +V
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSG--LDYALMTGGDV 433
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
R LL GPPGTGK+++ A+A LG
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLG 263
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKV 349
+LL GP GTGKT +A A+A E G +
Sbjct: 773 ILLFGPSGTGKTMLAKAVATEAGANL 798
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQEL 337
GR LL GPP +GKT + LA+A +L
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKL 204
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+ +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 240
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ AIA L
Sbjct: 248 RGYLLYGPPGTGKSSLIAAIANHL 271
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
V+ ++R+ +++ + +LL G PG GKT++ LA+ + G KV
Sbjct: 1735 VLRVLRAMQLS-KPILLEGSPGVGKTSLILALGKYSGHKV 1773
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPM 364
R +LL GP G+GK+A+ +A E G V F M
Sbjct: 354 RPVLLYGPSGSGKSALIRKLADESGNHVVFIHM 386
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +2
Query: 191 LVGQESAREAAGIVVDMIRSKKMAGR------ALLLAGPPGTGKTAIALAIAQEL 337
+VGQ+ A +A + +RS+ GR + L GP G GKT +A A+A++L
Sbjct: 536 VVGQDEAVKAVAAAI--LRSRVGLGRPQQPSGSFLFLGPTGVGKTELAKALAEQL 588
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST-EIKKTEVLMENFRRAI 436
R LL GPPGTGK+++ A+A L K + S +Y E+K+ VL+ R+I
Sbjct: 244 RGYLLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYDNGELKR--VLLSTTNRSI 297
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
R +L GPPGTGKT A +A+ G + + M G +V
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSG--LDYALMTGGDV 434
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 400
G L + GP G+GKT + A+A L K+ E +++ +K+
Sbjct: 110 GELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKR 155
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 31.5 bits (68), Expect = 0.53
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR 445
R LL GPPGTGK+++ A+A L K + S +Y K+ +L+ R+I
Sbjct: 245 RGYLLYGPPGTGKSSLIAAMANYL--KFDVFDLELSSIYENAQLKS-ILLSTTNRSI--L 299
Query: 446 IRETKEVYEGEVTELTPVETENPAGGY 526
+ E + EV + E + GY
Sbjct: 300 VIEDIDCSSAEVVDREADEYQEYEEGY 326
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ AIA +
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANHM 263
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
V +IR K+M LL GPPG GKT + LA++ L
Sbjct: 155 VSGIIRPKRMT----LLLGPPGCGKTTLLLALSGRL 186
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLME 418
GR LL GPPG GKT + A++ + V VG EV +E + E
Sbjct: 167 GRMTLLLGPPGCGKTTLLQALSGKFSDSV----KVGGEVCYNGCSLSEFIPE 214
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKV 349
GR LL GPPG GKT + A++ L V
Sbjct: 164 GRMTLLLGPPGCGKTTLLQALSGRLSHSV 192
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIA 328
R LL GPPGTGK+++ AIA
Sbjct: 32 RGYLLYGPPGTGKSSLVAAIA 52
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ A+A L
Sbjct: 300 RGYLLYGPPGTGKSSLIAAMANHL 323
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ A+A L
Sbjct: 246 RGYLLYGPPGTGKSSLVAAMANYL 269
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 406
+ L + G G GKT + A+ + K + P + +YS E K+ E
Sbjct: 115 KTLAIVGKYGVGKTTLCQAVFNDEDVKQVYFPRIWVSMYSKETKEDE 161
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 215 EAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
E + I + GR + + G PGTGKT L++ + L +V
Sbjct: 443 EITAFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 487
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 215 EAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
E + I + GR + + G PGTGKT L++ + L +V
Sbjct: 448 EITSFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 492
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLHGPPGTGKSTMIAAMANHLNYSI 264
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTK 346
G+ + L+GP G GKT+I +IA+ L K
Sbjct: 449 GKIICLSGPTGVGKTSIGRSIARALDRK 476
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 164 GVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGR------ALLLAGPPGTGKTAIALAI 325
G+ ++ +VGQ A A + +RS+ GR + L GP G GKT +A A+
Sbjct: 562 GLADRLHKRVVGQNQAVNAVSEAI--LRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKAL 619
Query: 326 AQEL 337
A++L
Sbjct: 620 AEQL 623
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKVP 352
G+ LL+ GPPG GKT + + + + P
Sbjct: 5 GKCLLVTGPPGVGKTTLIMRVLDMMRVSNP 34
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
+A+LL+G PG GKT A ++Q LG
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLG 418
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+ + AIA L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAIANFL 267
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPP +GKT + LA+A +L
Sbjct: 174 RMTLLLGPPSSGKTTLLLALAGKL 197
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQEL 337
GR LL GPPG GKT + A++ L
Sbjct: 165 GRLTLLLGPPGCGKTTLLKALSGNL 189
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 NGVPIQMAAGLVGQESAREAAGIVVDM-IRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
N P + G+VG E+ ++D+ KM G ++GP G GKT IA A+ L
Sbjct: 180 NATPSRDFNGMVGLEAHLTEMESLLDLDYDGVKMVG----ISGPAGIGKTTIARALQSRL 235
Query: 338 GTK 346
K
Sbjct: 236 SNK 238
>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1607
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 161 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
N + GLVG E+ E ++ + +K R + + G PG+GKT IA + Q+L
Sbjct: 258 NSTQSSASQGLVGMEAHMEKMKELLGLDSNKV---RLIGICGLPGSGKTTIAKRLYQQL 313
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+++ A+A L
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYL 261
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 191 LVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+VG E+ EA + +R K R + ++GP G GKT IA A+ +L
Sbjct: 183 IVGIEAHLEAMSSI---LRLKSEKARMVGISGPSGIGKTTIAKALFSKL 228
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 367
R + + GPPG GKT IA + + PF ++
Sbjct: 235 RMIGILGPPGIGKTTIATCMFDRFSRRFPFAAIM 268
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+ + AIA L
Sbjct: 229 RGYLLFGPPGTGKSTMISAIANFL 252
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 233 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+DM+ G+++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 233 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+DM+ G+++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 367
R + + GPPG GKT IA + ++ K F +
Sbjct: 256 RMIGILGPPGIGKTTIARVLYDQISEKFQFSAFI 289
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R+ L GPPGTGK+++ A+A L
Sbjct: 221 RSYFLYGPPGTGKSSLVAAMANYL 244
>At4g14746.1 68417.m02269 expressed protein
Length = 250
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 588 LSCLVPLAVFSPMIT*DTVFP*PPAGFSVSTGVNSVTSPSYTSLVSRIRR--PIARRKFS 415
L C+ P SP+IT P PP ++++ + + S+ S R P+ RR
Sbjct: 66 LPCITPNCNISPLITASPAQPKPPPKDNITSFFDRKSLISFFLCFSGPRHIVPVGRRSEH 125
Query: 414 INTSVF 397
+N S+F
Sbjct: 126 VNISLF 131
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMANLLNYSI 264
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIA-QEL--GTKVPFC 358
D I + LL GPPGTGKT + I QE+ G+K+ C
Sbjct: 196 DAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILAC 239
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKV 349
LL+ GP G+GK+A A A+E G K+
Sbjct: 388 LLIVGPAGSGKSAAIHACAKEQGFKI 413
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+ + A+A L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAMANLL 267
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
R LL GPPGTGK+ + A+A L +
Sbjct: 242 RGYLLYGPPGTGKSTMISAMANLLNYNI 269
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV 409
++ ++ + + R++ + G G GKT IA I +++ + C ++ E+K +
Sbjct: 826 ILSLLCIESLDVRSIGIWGTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDA 885
Query: 410 LMENF 424
+ ENF
Sbjct: 886 VRENF 890
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGT 343
GR LL GPPG+GK+ + A++ + T
Sbjct: 172 GRLTLLLGPPGSGKSTLLKALSGKTET 198
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+ + A+A L
Sbjct: 241 RGYLLFGPPGTGKSTMIAAMANFL 264
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 501 STGVNSVTSPSYTSLVSRIRRPIARRKFSINTSVFLISVL*TSLP 367
S+ NSV+SP T S R P +RR +TS F +S+ +S P
Sbjct: 626 SSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYP 670
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 206 SAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKT---AIALAIAQELGTKVPFC 358
S++EAA + R+ K L+ GPPGTGKT A L+ +L K C
Sbjct: 246 SSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVC 299
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
V +IR K+M LL GPP GKT + LA++ L
Sbjct: 157 VSGIIRPKRMT----LLLGPPSCGKTTLLLALSGRL 188
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIA 328
R LL GPPGTGK+ + A+A
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMA 257
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPGTGK+ + A+A L
Sbjct: 240 RGYLLFGPPGTGKSTMISAMANFL 263
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +2
Query: 137 IKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIA 316
I+ GLD +G + + G G E + + I + G+ + + GP G GK+++
Sbjct: 427 IERSGLDASGTAVDIQVGNFGWEPETKIP--TLRNIHLEIKHGQKVAVCGPVGAGKSSLL 484
Query: 317 LAIAQELGTKVPFCPMVGSEVYSTE 391
A+ E+ + GS Y ++
Sbjct: 485 HAVLGEIPKVSGTVKVFGSIAYVSQ 509
>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
to urease accessory protein UREG GI:4324678 from
[Arabidopsis thaliana]; contains Pfam profile: PF01495
HypB/UreG nucleotide-binding domain
Length = 275
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 278 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE 391
+ GP GTGKTA+ LA+ + L K V +++++ E
Sbjct: 78 IGGPVGTGKTALMLALCRFLRDKYSLA-AVTNDIFTKE 114
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
+ LLL G PG GKT +A A+ G +V
Sbjct: 346 KILLLCGAPGLGKTTLAHIAAKHCGYRV 373
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +2
Query: 83 IEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIR-SKKM 259
+ V S Q+I+A + + L++ Q+ +VGQ+ A A V R K
Sbjct: 598 VASVWSGIPVQQITADERMLLMSLED-----QLRGRVVGQDEAVAAISRAVKRSRVGLKD 652
Query: 260 AGR---ALLLAGPPGTGKTAIALAIA 328
R A+L GP G GKT + A+A
Sbjct: 653 PDRPIAAMLFCGPTGVGKTELTKALA 678
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 278 LAGPPGTGKTAIALAIAQELGT 343
L G PG GKTAIA +AQ + +
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIAS 321
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQEL 337
L+ GPPGTGKT + AI +
Sbjct: 507 LIQGPPGTGKTVTSAAIVYHM 527
>At5g45440.1 68418.m05583 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 346
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKK 400
++L++ G G GKTA+ I + + + P + ++S E K+
Sbjct: 79 KSLVVVGEYGVGKTALCQQIFNDYDVRNAYAPRIWVSMHSNESKE 123
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 284 GPPGTGKTAIALAIAQELGTKVPFCPMVGS 373
GP G GKT IA A+ +L T F +G+
Sbjct: 212 GPAGIGKTTIARALYNQLSTNFQFKCFMGN 241
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R + + GPPG GKT IA A+ ++
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQI 238
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQ 331
+L+ GPPG+GKT +A A A+
Sbjct: 596 ILIYGPPGSGKTILARAAAK 615
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV 409
V+D + AG + L GP G GKT + + + + P GS + +I ++
Sbjct: 412 VLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLR------LYEPSSGS-IIIDKIDIKDI 464
Query: 410 LMENFRRAIGLRIRETKEVYEGEVTE 487
+E+ R+ +GL ++T ++ G + +
Sbjct: 465 KLESLRKHVGLVSQDT-TLFSGTIAD 489
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 278 LAGPPGTGKTAIALAIAQELGT 343
L G PG GKTAIA +AQ + +
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIAS 342
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 28.3 bits (60), Expect = 5.0
Identities = 32/112 (28%), Positives = 52/112 (46%)
Frame = +2
Query: 146 LGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 325
+GL E ++ A + + R A G+ + R MA G PGTGKT +A +
Sbjct: 211 VGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMA-----FLGNPGTGKTMVARVL 265
Query: 326 AQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEV 481
+ L T V P +V TE+++T+++ E F G + R + EG +
Sbjct: 266 GKLLNT-VGILPT--DKV--TEVQRTDLVGE-FVGHTGPKTRRKIQEAEGGI 311
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3
Query: 208 RLLTHETGCHLNR----NTIFIQPQAFYMTVSRDPLRFS 104
+L TH+ GC++ + NT+ +Q + +SRD LR S
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLS 406
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 242 IRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN 421
+ K GR + GP G GKT A L K P C M G + + +++ +++
Sbjct: 519 VTGKLSPGRVSAVMGPSGAGKTTFLTA----LTGKAPGCIMTGMILVNGKVES----IQS 570
Query: 422 FRRAIG 439
+++ IG
Sbjct: 571 YKKIIG 576
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 218 AAGIVVDMIRSKKMAGRALLLAGPPGTGKTAI 313
A ++ + + ++G++LL+ GP G+GKT++
Sbjct: 1108 AQKLMASKLSCEIVSGKSLLVTGPNGSGKTSV 1139
>At4g27420.1 68417.m03941 ABC transporter family protein
D.melanogaster P element CaSpeR-1 gene (white
protein),PID:g870996
Length = 639
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 167 VPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 340
V ++ + G G+ E I+ + K G L + GP G+GKT++ A+ +G
Sbjct: 47 VKLKDSQGCFGKNDKTEERTILKGLTGIVK-PGEILAMLGPSGSGKTSLLTALGGRVG 103
>At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 170 PIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 796
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 170 PIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 520
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 170 PIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAI 325
+L+ GPPGTGKT L+I
Sbjct: 276 VLIQGPPGTGKTQTILSI 293
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQEL 337
GR LL GPP GKT + A++ L
Sbjct: 200 GRLTLLLGPPSCGKTTLLKALSGNL 224
>At3g45450.1 68416.m04908 Clp amino terminal domain-containing
protein contains Pfam profile: PF02861 Clp amino
terminal domain
Length = 341
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGT 343
VV ++ + A L+ G PG GK AIA IAQ + +
Sbjct: 166 VVQILARRTCRNNACLI-GKPGVGKRAIAEGIAQRIAS 202
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
++IR G ++L+ G PG GKT + IA+ L
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
++IR G ++L+ G PG GKT + IA+ L
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPP +GKT + A+A +L
Sbjct: 200 RMTLLLGPPSSGKTTLLQALAGKL 223
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPP +GKT + A+A +L
Sbjct: 202 RMTLLLGPPSSGKTTLLQALAGKL 225
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 161 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 325
N P + G+VG E+ ++D+ + + + +AGP G GKT IA A+
Sbjct: 177 NATPSRDFDGMVGIEAHLREIKSLLDL---DNVEVKIVAIAGPAGIGKTTIARAL 228
>At1g31770.1 68414.m03899 ABC transporter family protein contains
Pfam profile: PF00005: ABC transporter
Length = 648
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +2
Query: 167 VPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 346
V I+ + +G ++E +++ I G L + GP G+GKT + A+ L
Sbjct: 62 VKIEQTSQCMGSWKSKEKT--ILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKT 119
Query: 347 VPFCPMVGSEVYSTEIKK 400
M + +S IK+
Sbjct: 120 FSGKVMYNGQPFSGCIKR 137
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQEL 337
L+ GPPGTGKT +AI L
Sbjct: 1128 LIQGPPGTGKTRTIVAIISGL 1148
>At5g63590.1 68418.m07983 flavonol synthase, putative similar to
SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1)
{Arabidopsis thaliana}; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 308
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 371 SEVYSTEIKK-TEVLMENFRRAIGLRIRETKEVYEGEVTE 487
+E Y++ IKK +E +ME +GLR KE GE E
Sbjct: 130 NEEYASHIKKLSEKIMEWLSEGLGLRHEALKEGLGGETIE 169
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQ 331
LL+ G PGTGK+ A A+A+
Sbjct: 16 LLITGTPGTGKSTTASALAE 35
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = +2
Query: 107 KTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAG 286
K ++ ++H K + + + + +AG +A+ A +V++ +S +LL G
Sbjct: 180 KVLSVAVYNHYKRIYHESSQ---KRSAGETDSTAAKPADDDMVELEKSN------ILLMG 230
Query: 287 PPGTGKTAIALAIAQELGTKVPF 355
P G+GKT +A +A+ + VPF
Sbjct: 231 PTGSGKTLLAKTLARFV--NVPF 251
>At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family protein
contains Mpv17 / PMP22 family domain, Pfam:PF04117
Length = 254
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 173 IQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGP 289
I MAA L Q E G D+IR+ +MA L+ GP
Sbjct: 101 IYMAADLTSQMITMEPTGSF-DLIRTARMASFGLIFLGP 138
>At5g42470.1 68418.m05170 expressed protein low similarity to BRE
alpha b isoform [Homo sapiens] GI:16326573
Length = 382
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 152 LDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG 265
L G+ +QMA+G+ E + A +V+DM +K + G
Sbjct: 149 LTRKGIEMQMASGVDKPEEVKFAVPLVMDMNINKMVVG 186
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 206 SAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKT 307
S++EAA + IR+ L+ GPPGTGKT
Sbjct: 76 SSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKT 109
>At4g39540.2 68417.m05591 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELG 340
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g39540.1 68417.m05590 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELG 340
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 519 PAGFSVSTGVNSVTSPSYTSLVSRIR 442
PA S +T V ++T+ S TSL SR+R
Sbjct: 60 PADHSPATAVEAITNRSKTSLKSRLR 85
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
R LL G PG GKT++ AIA+ L V
Sbjct: 200 RYYLLHGLPGAGKTSLVAAIAKYLNFDV 227
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R +LL G PGTGKT + A+ L
Sbjct: 754 RGILLHGHPGTGKTLVVRALIGSL 777
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIA 328
++ + K M GR + GP G GKT A+A
Sbjct: 481 ILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALA 513
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQEL 337
++ G PG GKTAIA +AQ +
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRI 304
>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
GR + + GP +GKT +AL + E + C V +E
Sbjct: 112 GRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAE 149
>At2g01320.4 68415.m00049 ABC transporter family protein
Length = 725
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 203 ESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ + ++ ++ + + GR L + GP G+GKT + +A +L
Sbjct: 81 DKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL 125
>At2g01320.3 68415.m00047 ABC transporter family protein
Length = 728
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 203 ESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ + ++ ++ + + GR L + GP G+GKT + +A +L
Sbjct: 81 DKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL 125
>At2g01320.2 68415.m00046 ABC transporter family protein
Length = 727
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 203 ESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ + ++ ++ + + GR L + GP G+GKT + +A +L
Sbjct: 81 DKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL 125
>At2g01320.1 68415.m00048 ABC transporter family protein
Length = 725
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 203 ESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
+ + ++ ++ + + GR L + GP G+GKT + +A +L
Sbjct: 81 DKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL 125
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 332 ELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPVETE 508
E+ T++PF + E+ TEI + +L NFR+ G+ E GE E+ TE
Sbjct: 82 EIATRLPFSDLEAHEISETEI--STLLTNNFRKQ-GISSSENL----GETAEMDSATTE 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,009
Number of Sequences: 28952
Number of extensions: 309456
Number of successful extensions: 1174
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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