Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30619
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25) 109 2e-24
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0) 32 0.39
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 32 0.51
SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0) 31 0.90
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_18986| Best HMM Match : RecR (HMM E-Value=2.1) 30 2.1
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 30 2.1
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 29 2.7
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0) 29 2.7
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 29 2.7
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 29 4.8
SB_29789| Best HMM Match : TPR_2 (HMM E-Value=1.8e-16) 28 6.3
SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51) 28 8.4
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4) 24 9.3
>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
Length = 440
Score = 109 bits (262), Expect = 2e-24
Identities = 49/70 (70%), Positives = 59/70 (84%)
Frame = +2
Query: 95 MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQERSGNNTFNHNALTLQYKLDN 274
MLDLF+IFSKGGIVLWCFQ + + F+ VN LI+ VILQER G+N F H++LTL+YKLDN
Sbjct: 63 MLDLFTIFSKGGIVLWCFQESYQSFTLPVNELIKGVILQERGGSNAFTHDSLTLKYKLDN 122
Query: 275 EFELVFVVAY 304
EFELVFV+ Y
Sbjct: 123 EFELVFVIIY 132
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WSS S+++ W++ N STY+NWS
Sbjct: 18 WSSHNNWSIHNNWSTHNNWSTYNNWS 43
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W++ N STY+NWS
Sbjct: 36 WSTYNNWSTHNNWSTYNNWSTYNNWS 61
Score = 31.1 bits (67), Expect = 0.90
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWSMR 307
WS++ S ++ W++ N ST++NW+ R
Sbjct: 78 WSTYNNWSTHNNWSTYNNWSTHNNWNTR 105
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N STY+NWS
Sbjct: 48 WSTYNNWSTYNNWSTHNNWSTYNNWS 73
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W++ N ST++NWS
Sbjct: 54 WSTYNNWSTHNNWSTYNNWSTHNNWS 79
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W++ N ST++NWS
Sbjct: 66 WSTYNNWSTHNNWSTYNNWSTHNNWS 91
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W + N ST++NWS
Sbjct: 90 WSTYNNWSTHNNWNTRNNWSTHNNWS 115
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 30 WSTHNNWSTYNNWSTHNNWSTYNNWS 55
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 60 WSTHNNWSTYNNWSTHNNWSTYNNWS 85
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 72 WSTHNNWSTYNNWSTHNNWSTYNNWS 97
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ + + W++ N STY+NWS
Sbjct: 96 WSTHNNWNTRNNWSTHNNWSTYNNWS 121
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W+ N ST++NWS
Sbjct: 12 WSTYENWSSHNNWSIHNNWSTHNNWS 37
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS S ++ W++ N ST++NWS
Sbjct: 24 WSIHNNWSTHNNWSTYNNWSTHNNWS 49
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N ST++NWS
Sbjct: 42 WSTHNNWSTYNNWSTYNNWSTHNNWS 67
>SB_50860| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 933
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ED+ S K S+ ++ GDE G+ K + S + ++GK E+ NN
Sbjct: 371 YEDAMNSFKNALSLFQKTGDESGQAKAYLGMGSVHRSHGKYEDAMNN 417
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 470 SQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
S + +ED+ S K S+ ++ GDE G+ K + + + GK E+ NN
Sbjct: 80 SMGNVHSSQGKYEDAMNSFKNALSLFQKTGDESGQAKAYHGMGNVHFNQGKYEDALNN 137
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 470 SQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
S + + FED+ + + S++++ GDE G+ + + + + + GK E+ N+
Sbjct: 40 SMGNVHRSHGKFEDAMNTYQHAHSLLQKTGDESGQANAYLSMGNVHSSQGKYEDAMNS 97
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ED+ + + S+ ++ GDE+G+ + + + + ++GK E+ NN
Sbjct: 131 YEDALNNYQHALSLFQKTGDERGQADAYLGMGNVHRSHGKYEDAMNN 177
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STYDNWS
Sbjct: 382 WSTHNNWSTYNNWSTYNNWSTYDNWS 407
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N STY+NWS
Sbjct: 58 WSTYNNWSTYNNWSTYNNWSTYNNWS 83
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N STY+NWS
Sbjct: 70 WSTYNNWSTYNNWSTYHNWSTYNNWS 95
Score = 31.1 bits (67), Expect = 0.90
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWSM 310
WS++ S ++ W++ N ST++NWS+
Sbjct: 334 WSTYNNWSTHNNWSTYNNWSTHNNWSI 360
Score = 31.1 bits (67), Expect = 0.90
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S ++ W++ N STY+NWS
Sbjct: 376 WSTHNNWSTHNNWSTYNNWSTYNNWS 401
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N STY NWS
Sbjct: 64 WSTYNNWSTYNNWSTYNNWSTYHNWS 89
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W++ N ST++NWS
Sbjct: 310 WSTYNNWSTHNNWSTYNNWSTHNNWS 335
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W++ N ST++NWS
Sbjct: 322 WSTYNNWSTHNNWSTYNNWSTHNNWS 347
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S ++ W+ L N STYDN S
Sbjct: 346 WSTYNNWSTHNNWSILNNWSTYDNCS 371
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S+ + W++ N STY+NWS
Sbjct: 352 WSTHNNWSILNNWSTYDNCSTYNNWS 377
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S W++ N ST+DNWS
Sbjct: 394 WSTYNNWSTYDNWSTHNNWSTHDNWS 419
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S N+ W++ N STY+NWS
Sbjct: 47 WSTYNNWSHNN-WSTYNNWSTYNNWS 71
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNW 316
WS++ S + W++ N STY+NW
Sbjct: 82 WSTYHNWSTYNNWSTHNNWSTYNNW 106
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 304 WSTHNNWSTYNNWSTHNNWSTYNNWS 329
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 316 WSTHNNWSTYNNWSTHNNWSTYNNWS 341
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S + W++ N STY+NWS
Sbjct: 328 WSTHNNWSTYNNWSTHNNWSTYNNWS 353
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S W++ N ST++NWS
Sbjct: 76 WSTYNNWSTYHNWSTYNNWSTHNNWS 101
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N ST++NWS
Sbjct: 364 WSTYDNCSTYNNWSTHNNWSTHNNWS 389
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS++ S + W++ N ST++NWS
Sbjct: 388 WSTYNNWSTYNNWSTYDNWSTHNNWS 413
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 390 WSSFLYLSLNSKWTSLRNLSTYDNWS 313
WS+ S ++ W++ N +TY NWS
Sbjct: 418 WSNHNNWSAHNNWSAHNNWNTYHNWS 443
>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 479 KIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
K+ K +ED+ + + S+ ++ GDE G+ + + + + GK E+ NN
Sbjct: 630 KVHKSQGKYEDAMNNYQHALSLFQKTGDESGQANAYLGIGKVHKSQGKYEDAMNN 684
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 482 IPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ K +EDS + + S+ ++ GDE G+ + + + + GK E+ TNN
Sbjct: 30 VHKPQGKYEDSTNNYQQALSLFQKTGDESGQANAYLGMGNVHKPQGKYEDSTNN 83
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 341 LNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQK 520
+ DVHL + KY++ + V F+ T D V + + + ++ +ED+
Sbjct: 268 MGDVHLN-KGKYEDAMNIYQHAVSL-FQKTGD-VSDQANAYLE-MGEVHSFQGKYEDAMN 323
Query: 521 SKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ + S+ ++ GDE G+ + + + + GK E+ NN
Sbjct: 324 NYQHALSLFQKTGDESGQAYAYLGMGNVHKPQGKYEDAMNN 364
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ED+ + + S+ ++ GDE G+ + + + + GK E+ NN
Sbjct: 598 YEDAMNNYQHALSLFQKTGDESGQANAYLGIGKVHKSQGKYEDAMNN 644
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 482 IPKQMRTFEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ K +ED+ + + S+ ++ GDE + K + +L GK E+ NN
Sbjct: 511 VHKSEGKYEDAMNNYQRALSLFQKTGDESSRAKAYHGMGDVHLNKGKYEDAMNN 564
>SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1307
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 IPKQMRTFEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNNTYDDDV 658
+ K +ED+ + + S+ ++ GDE G+ KT + + + GK E+ NN Y +
Sbjct: 404 VHKNQGKYEDAMNNYQHALSLFQKTGDESGQAKTYHGMGDAHWSQGKYEDAMNN-YQHAL 462
Query: 659 IAANRA 676
N+A
Sbjct: 463 SLFNKA 468
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNNTYDDDVIAANRA 676
+ED+ + + S+ ++ GDE G+ KT + + + GK E+ NN Y + N+A
Sbjct: 91 YEDAMNNYQHALSLFQKTGDESGQAKTYHGMGDAHWSQGKYEDAMNN-YQHALSLFNKA 148
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNNTYDDDVIAANRA 676
+ED+ + + S+ ++ GDE G+ KT + + + GK E+ NN Y + N+A
Sbjct: 531 YEDAMNNYQHALSLFQKTGDESGQAKTYHGMGDAHWSQGKYEDAMNN-YQHALSLFNKA 588
>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 467 KSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXIVESKNLTNGKAEEVTNNTY 646
K Q PK+M+ + D K++ T+A + E GD+K K E K N K + TN+
Sbjct: 444 KVQLVTPKEMKRYLD--KARDTIARIRESMGDDKAGKDDCNAEDKISENHKQQ--TNDEN 499
Query: 647 DDD 655
D +
Sbjct: 500 DKE 502
>SB_18986| Best HMM Match : RecR (HMM E-Value=2.1)
Length = 190
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 452 CEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERK-----GDEKGKKTVXIVESKNLTNG 616
C +S+AK + TF ++ K T E+K GDEK K I++ +NL
Sbjct: 91 CTAARRSEAKKSDNLFTFAGLRRRKPTPVQDAEQKDDAVKGDEKKGKKKRIIQKRNLKTS 150
Query: 617 KAE 625
K +
Sbjct: 151 KTD 153
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +2
Query: 437 KVLKECEIWAKSQAKI--PKQMRTFEDSQKSKKTVA---SMIERKGDEKGKKTVXIVESK 601
K+ K+ E A + K+ PK+ R E ++KSKK + S +K +K KT ++K
Sbjct: 105 KLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVTSEPKSPKVKKSKDKSTKTTKKSDAK 164
Query: 602 N-LTNGKAEEVTNNTYDDDVIAANRAKLAQK 691
+ + K+ T T AA K ++K
Sbjct: 165 SPKKDAKSPTTTKKTSKTTKTAAKSPKKSEK 195
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 257 VVLRHYD*MCYCQSVLAILHYVLKHS-RMAKIFH 159
V +++ D C+ SVLA LH V +HS R IFH
Sbjct: 119 VNIKNNDNKCFMWSVLAALHPVERHSERQETIFH 152
>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 635
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ED+ S + S+ ++ GDE+G+ K + + + GK E+ NN
Sbjct: 274 YEDAMNSFQHALSLFQKTGDERGQAKAYHGMGNVHFNQGKYEDALNN 320
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 482 IPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ K +ED+ + + S+ ++ GDE G+ + + + + ++GK E+ NN
Sbjct: 547 VHKDQGKYEDALNNYQHALSLFQKTGDESGQANAYLGMGNVHRSHGKYEDAMNN 600
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ED+ S + S+ ++ GDE+G+ K + + + GK E+ NN
Sbjct: 131 YEDAMNSFQHALSLFQKTGDERGQAKAYHGMGNVHFNQGKYEDALNN 177
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 341 LNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQK 520
+ DVH+ F+ KY++ + + F+ T D+ + I S ++ +ED
Sbjct: 201 MGDVHM-FQAKYEDAMNNYQHALSL-FQKTGDESGQA--IAYLSMGEVHMFQGKYEDVMN 256
Query: 521 SKKTVASMIERKGDEKGKKTVXIVESK-NLTNGKAEEVTNN 640
+ + S++++ GDE G+ + K + GK E+ NN
Sbjct: 257 NYQHALSLLQKTGDESGQANAYLGMGKVHSFQGKYEDAMNN 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 479 KIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXIVESK-NLTNGKAEEVTNN 640
K+ K +ED+ + + S+ ++ GDE + + K + ++GK E+ NN
Sbjct: 323 KVHKSQAKYEDALNNYQHALSLFQKTGDESCQAKAYLGMGKVHRSHGKYEDAMNN 377
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGKKTVXI-VESKNLTNGKAEEVTNN 640
+ED+ + + S+ ++ GDE+G+ + + + + ++GK E+ NN
Sbjct: 435 YEDAMNNYQHAHSLFQKTGDERGQANAYLGMGNVHRSHGKYEDAMNN 481
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 503 FEDSQKSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ED+ + + S+ ++ GDE G+ K + + + + GK E+ NN
Sbjct: 515 YEDAMNNYQRALSLFQKTGDESGQAKAYRGMGNVHWSQGKYEDAMNN 561
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 28.7 bits (61), Expect = 4.8
Identities = 32/162 (19%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 167 FSPSVNALIRSVILQERSGNNTFNHNALTLQYK-LDNEFELVFVVAYQRILQLSYVDKFL 343
+ ++N +++ L +++G+ + NA +Y+ N ++ V + +Q+ +S K
Sbjct: 203 YEDAMNNYQQALSLFQKTGDESGQANATMAKYEDAMNNYQHVLSL-FQKTGDVSGQAKAY 261
Query: 344 NDVHLEFRD--KYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQ 517
+ + +R KY++ + + F+ T D+ + E + K+ +ED+
Sbjct: 262 HGMGNVYRSHGKYEDAMNNYQHALSL-FQKTGDES-GQAEAY-HGMGKVQSFQGKYEDAM 318
Query: 518 KSKKTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
+ + S+ ++ GDE G+ K + + + + GK E+ NN
Sbjct: 319 NNYQHALSLFQKTGDESGQAKAYLGMGNVHRSQGKYEDAMNN 360
>SB_29789| Best HMM Match : TPR_2 (HMM E-Value=1.8e-16)
Length = 551
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 KTVASMIERKGDEKGK-KTVXIVESKNLTNGKAEEVTNN 640
K SM ++ GDE G+ K + + + GK E+ TNN
Sbjct: 5 KHALSMFQKTGDESGQAKAYLGMSNVHFNQGKYEDATNN 43
>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 564 SSPLRSIIDATVFLDFWESSKVLICFGILACDFAHISHSF--STLSKVVLKL 415
S +R +++ T+ LD W + F +L C F +TLS KL
Sbjct: 123 SRSIRKVLEVTLGLDVWTGFANSLTFALLVCTLWRTEREFPLATLSSAHAKL 174
>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
Length = 526
Score = 24.2 bits (50), Expect(2) = 9.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = -3
Query: 363 NSKWTSLRN---LSTYDNWSMRWYAT 295
N +W L N +S D W WYAT
Sbjct: 293 NPEWRQLFNKDVVSMPDKWEYPWYAT 318
Score = 21.8 bits (44), Expect(2) = 9.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 477 ACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLYLSLNSKW 352
A +F H++ S S+ L + + G +WS Y + W
Sbjct: 231 ADEFYHVAIPASLTSEQKLVARQSYAGLLWSKQFYHYIIHDW 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,046
Number of Sequences: 59808
Number of extensions: 386165
Number of successful extensions: 1013
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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