Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30619
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30600.1 68417.m04341 signal recognition particle receptor al...    77   1e-14
At5g58890.1 68418.m07378 MADS-box family protein various predict...    31   0.73 
At3g25790.1 68416.m03210 myb family transcription factor contain...    30   1.3  
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    29   2.2  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    29   3.0  
At4g40020.1 68417.m05666 hypothetical protein                          29   3.9  
At5g55690.1 68418.m06943 MADS-box protein (AGL47)                      28   5.2  
At1g49560.1 68414.m05557 myb family transcription factor contain...    28   5.2  
At5g49520.1 68418.m06128 WRKY family transcription factor contai...    28   6.8  
At3g61120.1 68416.m06840 MADS-box protein (AGL13)                      28   6.8  
At1g05920.1 68414.m00621 hypothetical protein contains Pfam prof...    28   6.8  
At2g35880.1 68415.m04405 expressed protein                             27   9.0  

>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
           subunit family protein similar to Signal recognition
           particle receptor alpha subunit (SR-alpha) (Docking
           protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
           similar to Signal recognition particle receptor alpha
           subunit  (SR-alpha) (Docking protein alpha) (DP-alpha)
           (SP:P06625) [Canis familiaris};  contains Pfam PF04086:
           Signal recognition particle, alpha subunit, N-terminal;
           contains Pfam PF00448: SRP54-type protein, GTPase domain
          Length = 634

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 5/168 (2%)
 Frame = +2

Query: 95  MLDLFSIFSKGGIVLW-CFQSTSEIFSPSVNALIRSVILQERSGNNTFNHNA----LTLQ 259
           ML+   IF++GG++LW C +  + +    ++ LIRS +L+ERSG  +FN++A     TL+
Sbjct: 1   MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60

Query: 260 YKLDNEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDK 439
           +   N+  LVFV  YQRIL L YVD  L+ V   F + Y       P  + ++    FD+
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVY------DPKRMAYD---DFDE 111

Query: 440 VLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTV 583
             ++  I A+++A+  ++ +       S K     + + G E G K V
Sbjct: 112 TFRQLRIEAEARAEELRKTKQVGKPVTSVKK-QGQVSKPGLEGGNKRV 158


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +2

Query: 401 CIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKT 580
           C++ +      D V+ E EIW K + K+   +R ++D+  +     + +E   ++ GK  
Sbjct: 44  CLIVYGPTKATDVVISEPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGN 103

Query: 581 VXIVESK 601
             + + +
Sbjct: 104 EVVTKKR 110


>At3g25790.1 68416.m03210 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 357

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = +2

Query: 365 RDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASM 544
           +D    E Q+    +DF+ K    + LK  ++W +S A +    +  + SQ+  +T+  +
Sbjct: 103 KDDDDEEHQSHETDIDFDDKNMKSEWLKSVQLWNQSDAVVSNNRQ--DRSQEKTETLVEL 160

Query: 545 IERKGDEKGKKTVXIVESKNLTNG 616
           I +  DE  KK   I      ++G
Sbjct: 161 I-KINDEAAKKNNNIKSPVTTSDG 183


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 501 VLICFGILACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLYL 370
           +L+C  IL C  +H S   S L+   L L+S+   P+W  +LYL
Sbjct: 242 LLLCCNILTCLTSHTSVLSSNLALSNLLLQSSPSQPLW-LYLYL 284


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 440 VLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXIVESKNLTNGK 619
           V+ ECE       +  K M TF DS + +  +A   ERK  E  K+T    ++  +T GK
Sbjct: 633 VIGECE--DGEGGRFVKTMMTFLDSVEEEVKIAKGEERKVMELVKRTTDYYQAGAVTKGK 690


>At4g40020.1 68417.m05666 hypothetical protein
          Length = 615

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/100 (23%), Positives = 42/100 (42%)
 Frame = +2

Query: 356 LEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTV 535
           L+F  K    ++    + + N K    K+L E E+     A   ++ R+    +   K V
Sbjct: 337 LQFALKEIERVKVNEAVANDNIKK-LKKMLSEIEV-----AMEEEKQRSLNRQESMPKEV 390

Query: 536 ASMIERKGDEKGKKTVXIVESKNLTNGKAEEVTNNTYDDD 655
             ++E+K +EK KK       K     K E+  ++   +D
Sbjct: 391 VEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEKKED 430


>At5g55690.1 68418.m06943 MADS-box protein (AGL47) 
          Length = 277

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 401 CIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSK----KTVASMIERKGDEK 568
           C++ +      D+++ E E+W K  +K+ + +  + D+  S      TV   +E+   + 
Sbjct: 44  CVIVYGPSRAGDEMVMEPELWPKDGSKVREILTKYRDTASSSCTKTYTVQECLEKNNTKV 103

Query: 569 GKKTV 583
            K T+
Sbjct: 104 EKPTI 108


>At1g49560.1 68414.m05557 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 333

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/85 (22%), Positives = 40/85 (47%)
 Frame = +2

Query: 314 LQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQ 493
           L+L    + LND  L  +DK  +E++T P + DF       +  +  E+  + +    K+
Sbjct: 47  LELPLSLQILNDAILYLKDKRCSEMETQPLLKDFISVNKPIQGERGIELLKREELMREKK 106

Query: 494 MRTFEDSQKSKKTVASMIERKGDEK 568
            + ++ +      + S +E K +E+
Sbjct: 107 FQQWKANDDHTSKIKSKLEIKRNEE 131


>At5g49520.1 68418.m06128 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 399

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 589 YXDSFLPFLISFTFDHRCNSLFGFLGILKSPHLF 488
           +  S LPF  S+  DH  N+   FL +L+  H F
Sbjct: 71  FDTSSLPFPYSYFEDHSSNNPNSFLDLLRQDHQF 104


>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
          Length = 244

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +2

Query: 362 FRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVAS 541
           F+D   N + T  C  DF+ ++T    + +C +    Q    +     E S  +K    S
Sbjct: 177 FQDLLLNPVLTAGCSTDFSLQSTHQNYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARS 236

Query: 542 MIE 550
             E
Sbjct: 237 DAE 239


>At1g05920.1 68414.m00621 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 315

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 509 DSQKSKKTVASMIERKGDEKGKKTVXIVESKNLTNGKAEEVTNNTYDDDVIAANRAK 679
           D+QK  KTVA + E KG  + +      + K  T  + +E      ++ +   NR K
Sbjct: 28  DNQKKTKTVAQVREEKGKRREEMISRYNQKKAKTVAQVKEGKGKRREEMISRDNRTK 84


>At2g35880.1 68415.m04405 expressed protein
          Length = 432

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +2

Query: 467 KSQAKIPKQMRTFEDSQKSKKTVASMIERKGDEKGKKTVXIVESKNLTNGKAEEVTNNTY 646
           KSQ K+  Q ++ +  +K KK      E++G+E+    V     +   N    +V     
Sbjct: 365 KSQPKLETQEKSVKAKEKKKKVKKEEAEKRGEEEKATAVAAKPEEQKPNSNNIQVKAEIM 424

Query: 647 DDDVI 661
             +V+
Sbjct: 425 ASEVV 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,149
Number of Sequences: 28952
Number of extensions: 261842
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)