Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30618
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)                       31   1.2  
SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)
          Length = 328

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 529 HIMFYFLVANRSRAIEYRINQVYCNKISVLF 437
           H  FYF V+N    + YR N + C KI+  F
Sbjct: 166 HQWFYFEVSNMEADVPYRFNIINCEKINSQF 196


>SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 288 PFLISQQCFSLIGRMETVLSRGCGRKSESLNEWG 389
           PF +SQ+ FSLIGR E + ++   R  E L + G
Sbjct: 30  PFNLSQEAFSLIGR-EDLAAQASARDKEILPQHG 62


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 120  EPWMENFSVDPQLIKDYFQRFLYQPKDREYPDLCQLP 10
            E W EN S   ++ K   Q +   P+D  + D C  P
Sbjct: 1300 EEWSENTSASLEVYKTMRQLYPRPPEDESFSDNCNRP 1336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,042
Number of Sequences: 59808
Number of extensions: 392434
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)