Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30618
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38090.1 68418.m04589 hypothetical protein                          28   6.8  
At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase f...    28   6.8  
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,...    28   6.8  
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,...    28   6.8  
At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family prot...    27   9.0  
At1g79880.3 68414.m09332 La domain-containing protein contains P...    27   9.0  
At1g79880.2 68414.m09331 La domain-containing protein contains P...    27   9.0  
At1g79880.1 68414.m09333 La domain-containing protein contains P...    27   9.0  

>At5g38090.1 68418.m04589 hypothetical protein 
          Length = 146

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 695 YYSQTICTMLFCIAMTHLLFCIHSNM---VVLHTCI 597
           Y    IC  +  +   HLL+CI + +   VVLH C+
Sbjct: 70  YVMGRICNNIGFVIFLHLLYCISTRLALFVVLHFCL 105


>At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to steroid 5alpha-reductase - Rattus
           norvegicus, PIR:A34239 [SP|24008]; contains Pfam
           3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
          Length = 268

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 258 YLRVAVYFWRPFLISQQCFSL---IGRMETVLSRGCGRKSESLNEWGFTPNH--CLWPFI 422
           YL   + FW  FLISQ  +S    +G M  ++ R    ++  L+++   P H   L PF+
Sbjct: 208 YLFEILVFWSFFLISQTIYSFSFAMGTMLYLIGRSYATRTWYLSKFDDFPKHIKALIPFV 267


>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 274

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 120 EPWMENFSVDPQLIKDYFQRFLYQPKDREYPDLCQLP 10
           E W +N   +  LI+D    F Y   D E+P +   P
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRP 50


>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 274

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 120 EPWMENFSVDPQLIKDYFQRFLYQPKDREYPDLCQLP 10
           E W +N   +  LI+D    F Y   D E+P +   P
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRP 50


>At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 344

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 296 QKWTPKIYRHSQIFKFRHHFKNM 228
           +++TPK Y +S I  +R H KN+
Sbjct: 173 RRYTPKQYAYSLIIIYRSHLKNL 195


>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 357

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 117 PWMENFSVDPQLIKDYFQRF 58
           PW  + SV  +++KD FQRF
Sbjct: 228 PWNNSNSVSSEVLKDLFQRF 247


>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 345

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 117 PWMENFSVDPQLIKDYFQRF 58
           PW  + SV  +++KD FQRF
Sbjct: 228 PWNNSNSVSSEVLKDLFQRF 247


>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 399

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 117 PWMENFSVDPQLIKDYFQRF 58
           PW  + SV  +++KD FQRF
Sbjct: 282 PWNNSNSVSSEVLKDLFQRF 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,532
Number of Sequences: 28952
Number of extensions: 275739
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)