Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30617
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.6  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.6  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 24 HNSYPHRRVLAPTRPSSLS 80
          H+  PHR  + P  PSS S
Sbjct: 13 HHLEPHRMQIKPQSPSSSS 31



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 361 KSVVGFSQKLTNCIISPSSAHVFNCLRA 278
           K V  F + L         AH F CLRA
Sbjct: 275 KEVADFQETLKKISQFQLDAHEFACLRA 302


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 24 HNSYPHRRVLAPTRPSSLS 80
          H+  PHR  + P  PSS S
Sbjct: 13 HHLEPHRMQIKPQSPSSSS 31



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 361 KSVVGFSQKLTNCIISPSSAHVFNCLRA 278
           K V  F + L         AH F CLRA
Sbjct: 275 KEVADFQETLKKISQFQLDAHEFACLRA 302


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 362 LLLESSIIKGGNLCIWTKYF 421
           L L    I GG  C+W++ F
Sbjct: 540 LHLNKKQILGGEACLWSEQF 559


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   ELRVA*ITIRTLIGESSHQLDLQVSPRQRSS*RGR 108
           EL++    I T  G++ + L+ +  PRQ S  RGR
Sbjct: 177 ELKIPKAKINT--GKTQYNLNSKSLPRQYSQSRGR 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,378
Number of Sequences: 336
Number of extensions: 3015
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)